Changes for page 6. Output of the QUINT workflow
Last modified by puchades on 2022/02/18 13:42
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... ... @@ -1,11 +1,12 @@ 1 -== **How to interpret the //Quantifier// output**==1 +== How to interpret the //Quantifier// output == 2 2 3 -[[image:Quantifier output.png]] 4 4 5 5 1. **Images in PNG format** 6 6 7 7 Segmentations superimposed on the atlas maps. Object colours are assigned based on the sheet specified under “Report Regions”. If custom areas and colours are not specified, or object falls outside of the specified areas, the objects are shown in red by default. 8 8 8 +[[image:0209_71661877_resize_Simple Segmentation.png]] 9 + 9 9 (% start="2" %) 10 10 1. **Reports in CSV format** 11 11 ... ... @@ -15,7 +15,13 @@ 15 15 16 16 -Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section. 17 17 19 +[[image:Report_example.PNG]] 20 + 18 18 (% start="3" %) 19 19 1. **Coordinates in JSON format (for the whole series and per section)** 20 20 21 -These files contains the point clouds that can be visualised with the MeshView atlas viewer, which is available at [[www.nitrc.org/projects/meshview>>url:https://www.nitrc.org/projects/meshview]] via the MediaWiki link. 24 +== Visualise the QUINT output == 25 + 26 +The JSON files contains the point clouds that can be visualised with the MeshView atlas viewer, which is available at [[www.nitrc.org/projects/meshview>>url:https://www.nitrc.org/projects/meshview]] via the MediaWiki link. 27 + 28 +[[image:QUINTpoint cloud.png]]
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