Last modified by puchades on 2022/02/18 13:42
From version 4.1
edited by puchades
on 2020/03/25 16:22
Change comment: Uploaded new attachment "0209_71661877_resize_Simple Segmentation.png", version {1}
To version 9.1
edited by puchades
on 2020/04/07 14:53
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1 -== **How to interpret the //Quantifier// output** ==
1 +== (% style="color:#c0392b" %)How to interpret the //Nutil Quantifier// output(%%) ==
2 2  
3 -[[image:Quantifier output.png]]
4 4  
5 -1. **Images in PNG format**
4 +1. (% style="color:#c0392b" %)**Images in PNG format**
6 6  
7 7  Segmentations superimposed on the atlas maps. Object colours are assigned based on the sheet specified under “Report Regions”. If custom areas and colours are not specified, or object falls outside of the specified areas, the objects are shown in red by default.
8 8  
8 +[[image:0209_71661877_resize_Simple Segmentation.png]]
9 +
9 9  (% start="2" %)
10 -1. **Reports in CSV format**
11 +1. (% style="color:#c0392b" %)**Reports in CSV format**
11 11  
12 12  -RefAtlasRegions: report with output organised based on all the regions in the reference atlas.
13 13  
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15 15  
16 16  -Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section.
17 17  
19 +[[image:Report_example.PNG]]
20 +
18 18  (% start="3" %)
19 -1. **Coordinates in JSON format (for the whole series and per section)**
22 +1. (% style="color:#c0392b" %)**Coordinates in JSON format (for the whole series and per section)**
20 20  
21 -== Visualise the QUINT output ==
24 +== (% style="color:#c0392b" %)Visualise the QUINT output(%%) ==
22 22  
23 -The JSON files contains the point clouds that can be visualised with the MeshView atlas viewer, which is available at [[www.nitrc.org/projects/meshview>>url:https://www.nitrc.org/projects/meshview]] via the MediaWiki link.
26 +The JSON files contains point clouds coordinates in the selected reference atlas space that can be visualised with the MeshView atlas viewer, available at [[www.nitrc.org/projects/meshview>>url:https://www.nitrc.org/projects/meshview]] via the the corresponding atlas link in MediaWiki link.
24 24  
25 25  [[image:QUINTpoint cloud.png]]
Report_example.PNG
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