Last modified by puchades on 2022/02/18 13:42
From version 7.1
edited by puchades
on 2020/03/26 09:55
Change comment: There is no comment for this version
To version 16.1
edited by puchades
on 2020/09/24 11:11
Change comment: There is no comment for this version

Summary

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Content
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1 -== (% style="color:#c0392b" %)How to interpret the //Quantifier// output(%%) ==
1 +== (% style="color:#c0392b" %)How to interpret the //Nutil Quantifier// output(%%) ==
2 2  
3 3  
4 4  1. (% style="color:#c0392b" %)**Images in PNG format**
... ... @@ -7,22 +7,27 @@
7 7  
8 8  [[image:0209_71661877_resize_Simple Segmentation.png]]
9 9  
10 +(% class="small" %)Customized atlas map with individual features representation
11 +
12 +
10 10  (% start="2" %)
11 11  1. (% style="color:#c0392b" %)**Reports in CSV format**
12 12  
13 --RefAtlasRegions: report with output organised based on all the regions in the reference atlas.
16 +* RefAtlasRegions: report with output organised based on all the regions in the reference atlas.
17 +* CustomRegionsSummary and CustomRegionSections**: **reports with the output organised based on the custom regions defined in the template for the whole series (Summary) and for each individual section.
18 +* Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section.
14 14  
15 --CustomRegionsSummary and CustomRegionSections**: **reports with the output organised based on the custom regions defined in the template for the whole series (Summary) and for each individual section.
16 -
17 --Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section.
18 -
19 19  [[image:Report_example.PNG]]
20 20  
21 21  (% start="3" %)
22 22  1. (% style="color:#c0392b" %)**Coordinates in JSON format (for the whole series and per section)**
23 23  
25 +* The JSON files contains point clouds coordinates in the selected reference atlas space that can be visualised with the MeshView atlas viewer.
26 +
24 24  == (% style="color:#c0392b" %)Visualise the QUINT output(%%) ==
25 25  
26 -The JSON files contains the point clouds that can be visualised with the MeshView atlas viewer, which is available at [[www.nitrc.org/projects/meshview>>url:https://www.nitrc.org/projects/meshview]] via the MediaWiki link.
27 27  
28 28  [[image:QUINTpoint cloud.png]]
31 +
32 +
33 +Point clouds visualised with MeshView. Location of human amyloid in blue, mouse amyloid in red and pyroglutamate modified amyloid in green, in Hippocampal regions of transgenic Tg2573 mouse brain.