Changes for page 6. Output of the QUINT workflow
Last modified by puchades on 2022/02/18 13:42
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... ... @@ -7,15 +7,16 @@ 7 7 8 8 [[image:0209_71661877_resize_Simple Segmentation.png]] 9 9 10 +(% class="small" %)Customized atlas map with individual features representation 11 + 12 + 10 10 (% start="2" %) 11 11 1. (% style="color:#c0392b" %)**Reports in CSV format** 12 12 13 --RefAtlasRegions: report with output organised based on all the regions in the reference atlas. 16 +* RefAtlasRegions: report with output organised based on all the regions in the reference atlas. 17 +* CustomRegionsSummary and CustomRegionSections**: **reports with the output organised based on the custom regions defined in the template for the whole series (Summary) and for each individual section. 18 +* Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section. 14 14 15 --CustomRegionsSummary and CustomRegionSections**: **reports with the output organised based on the custom regions defined in the template for the whole series (Summary) and for each individual section. 16 - 17 --Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section. 18 - 19 19 [[image:Report_example.PNG]] 20 20 21 21 (% start="3" %) ... ... @@ -23,6 +23,6 @@ 23 23 24 24 == (% style="color:#c0392b" %)Visualise the QUINT output(%%) == 25 25 26 -The JSON files contains thepoint clouds that can be visualised with the MeshView atlas viewer,which isavailableat [[www.nitrc.org/projects/meshview>>url:https://www.nitrc.org/projects/meshview]]via the MediaWiki link.27 +The JSON files contains point clouds coordinates in the selected reference atlas space that can be visualised with the MeshView atlas viewer, [[available here>>https://www.nitrc.org/projects/meshview]] via the corresponding atlas link in MediaWiki link. 27 27 28 28 [[image:QUINTpoint cloud.png]]