Wiki source code of 6. Output of the QUINT workflow
Version 10.1 by evanhancock on 2020/07/21 07:36
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8.1 | 1 | == (% style="color:#c0392b" %)How to interpret the //Nutil Quantifier// output(%%) == |
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7.1 | 4 | 1. (% style="color:#c0392b" %)**Images in PNG format** |
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2.2 | 6 | Segmentations superimposed on the atlas maps. Object colours are assigned based on the sheet specified under “Report Regions”. If custom areas and colours are not specified, or object falls outside of the specified areas, the objects are shown in red by default. |
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6.1 | 8 | [[image:0209_71661877_resize_Simple Segmentation.png]] |
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2.2 | 10 | (% start="2" %) |
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7.1 | 11 | 1. (% style="color:#c0392b" %)**Reports in CSV format** |
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10.1 | 13 | * RefAtlasRegions: report with output organised based on all the regions in the reference atlas. |
| 14 | * CustomRegionsSummary and CustomRegionSections**: **reports with the output organised based on the custom regions defined in the template for the whole series (Summary) and for each individual section. | ||
| 15 | * Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section. | ||
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6.1 | 17 | [[image:Report_example.PNG]] |
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2.3 | 19 | (% start="3" %) |
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7.1 | 20 | 1. (% style="color:#c0392b" %)**Coordinates in JSON format (for the whole series and per section)** |
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7.1 | 22 | == (% style="color:#c0392b" %)Visualise the QUINT output(%%) == |
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3.2 | 23 | |
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10.1 | 24 | The JSON files contains point clouds coordinates in the selected reference atlas space that can be visualised with the MeshView atlas viewer, [[available here>>https://www.nitrc.org/projects/meshview]] via the the corresponding atlas link in MediaWiki link. |
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3.2 | 25 | |
| 26 | [[image:QUINTpoint cloud.png]] |