Summary

• Page properties (1 modified, 0 added, 0 removed)

Details

Page properties

Content

...	...	@@ -1,24 +1,37 @@
	1	+
	2	+
1	1	(% class="jumbotron" %)
2	2	(((
3	3	(% class="container" %)
4	4	(((
5		-== (% style="color:#16a085" %)**QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain**(%%) ==
	7	+== QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain ==
6	6
7		-(% style="color:#999999" %)Neural Systems Laboratory, University of Oslo
	9	+
8	8	)))
9	9	)))
10	10
11		-==== ====
	13	+(% class="row" %)
	14	+(((
	15	+(% class="col-xs-12 col-sm-8" %)
	16	+(((
	17	+= What can I find here? =
12	12
	19	+* Notice how the table of contents on the right
	20	+* is automatically updated
	21	+* to hold this page's headers
13	13
14		-==== (% style="color:#c0392b" %)Workflow Description(%%) ====
	23	+= Who has access? =
15	15
16		-The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software:
	25	+Describe the audience of this collab.
	26	+)))
17	17
18		-1. ilastik allows the extraction of labelled features such as cells by segmentation.
19		-1. QuickNII generates atlas maps customised to match the proportions and cutting plane of the brain sections.
20		-1. Nutil enables image transformations, in addition to quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII.
21	21
22		-In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
	29	+(% class="col-xs-12 col-sm-4" %)
	30	+(((
	31	+{{box title="**Contents**"}}
	32	+{{toc/}}
	33	+{{/box}}
23	23
24	24
	36	+)))
	37	+)))