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5		-== (% style="color:#16a085" %)**QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain**(%%) ==
	7	+== QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain ==
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7		-(% style="color:#999999" %)Neural Systems Laboratory, University of Oslo
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11		-==== ====
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	19	+* Notice how the table of contents on the right
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14		-==== (% style="color:#c0392b" %)Workflow Description(%%) ====
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16		-The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software:
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18		-1. (% style="color:#2980b9" %)//**ilastik**//(%%) allows the extraction of labelled features such as cells by segmentation.
19		-1. (% style="color:#2980b9" %)**//QuickNII//**(%%) generates atlas maps customised to match the proportions and cutting plane of the brain sections.
20		-1. (% style="color:#2980b9" %)**//Nutil//**(%%) enables image transformations, in addition to quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII.
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22		-In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
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	31	+{{box title="**Contents**"}}
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