Changes for page QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain
Last modified by puchades on 2022/11/02 10:16
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... ... @@ -11,7 +11,7 @@ 11 11 ==== ==== 12 12 13 13 14 -==== (% style="color:#c0392b" %)Workflow Description(%%) ==== 14 +==== (% style="color:#c0392b" %)**Workflow Description**(%%) ==== 15 15 16 16 The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software: 17 17 ... ... @@ -21,4 +21,26 @@ 21 21 22 22 In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions. 23 23 24 +[[Youtube video: https:~~/~~/www.youtube.com/watch?v=yPkAbSfla_c>>https://www.youtube.com/watch?v=yPkAbSfla_c]] 25 + 26 + 27 +==== (% style="color:#c0392b" %)**Workflow highlights**(%%) ==== 28 + 29 +* The QUINT workflow is semi-automated, combining three open-source software that can be operated without scripting knowledge. 30 + 31 +((( 32 +As the quantifications are performed in regions defined by a reference atlas, the region definitions are standardized, allowing comparisons of data from different laboratories. 33 + 34 + 35 +==== (% style="color:#c0392b" %)**References**(%%) ==== 36 + 37 +Yates SC et al. 2019. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: 10.3389/fninf.2019.00075 38 + 39 +[[https>>url:https://www.nitrc.org/projects/nutil/]][[:~~/~~/www.nitrc.org/projects/nutil>>url:https://www.nitrc.org/projects/nutil/]][[/>>url:https://www.nitrc.org/projects/nutil/]] 40 + 41 +[[https:~~/~~/>>url:https://www.nitrc.org/projects/quicknii]][[www.nitrc.org/projects/quicknii>>url:https://www.nitrc.org/projects/quicknii]] 42 + 43 +[[https:~~/~~/www.ilastik.org>>url:https://www.ilastik.org/]][[/>>url:https://www.ilastik.org/]] 44 +))) 45 + 24 24