Last modified by puchades on 2022/11/02 10:16
From version 12.1
edited by sharoncy
on 2020/03/09 14:04
Change comment: There is no comment for this version
To version 9.1
edited by sharoncy
on 2020/03/09 14:01
Change comment: There is no comment for this version

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16 16  The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software:
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18 -1. (% style="color:#2980b9" %)//ilastik//(%%) allows the extraction of labelled features such as cells by segmentation.
19 -1. (% style="color:#2980b9" %)//QuickNII//(%%) generates atlas maps customised to match the proportions and cutting plane of the brain sections.
20 -1. (% style="color:#2980b9" %)//Nutil//(%%) enables image transformations, in addition to quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII.
20 +1. ilastik allows the extraction of labelled features such as cells by segmentation.
21 +1. QuickNII generates atlas maps customised to match the proportions and cutting plane of the brain sections.
22 +1. Nutil enables quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII.
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22 22  In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
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