Attention: The Collaboratory IAM will down for up to 1 hour on Monday, the 7th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour. Any and all services, which require a user login with an EBRAINS account, will be un-available during that time


Last modified by puchades on 2022/11/02 10:16

From version 15.1
edited by sharoncy
on 2020/03/09 14:07
Change comment: There is no comment for this version
To version 12.1
edited by sharoncy
on 2020/03/09 14:04
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -11,7 +11,7 @@
11 11  ==== ====
12 12  
13 13  
14 -==== (% style="color:#c0392b" %)**Workflow Description**(%%) ====
14 +==== (% style="color:#c0392b" %)Workflow Description(%%) ====
15 15  
16 16  The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software:
17 17  
... ... @@ -21,24 +21,4 @@
21 21  
22 22  In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
23 23  
24 -
25 -==== (% style="color:#c0392b" %)**Workflow highlights**(%%) ====
26 -
27 -* The QUINT workflow is semi-automated, combining three open-source software that can be operated without scripting knowledge.
28 -
29 -(((
30 -As the quantifications are performed in regions defined by a reference atlas, the region definitions are standardized, allowing comparisons of data from different laboratories.
31 -
32 -
33 -==== (% style="color:#c0392b" %)**References**(%%) ====
34 -
35 -Yates SC et al. 2019. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: 10.3389/fninf.2019.00075
36 -
37 -[[https>>url:https://www.nitrc.org/projects/nutil/]][[:~~/~~/www.nitrc.org/projects/nutil>>url:https://www.nitrc.org/projects/nutil/]][[/>>url:https://www.nitrc.org/projects/nutil/]]
38 -
39 -[[https:~~/~~/>>url:https://www.nitrc.org/projects/quicknii]][[www.nitrc.org/projects/quicknii>>url:https://www.nitrc.org/projects/quicknii]]
40 -
41 -[[https:~~/~~/www.ilastik.org>>url:https://www.ilastik.org/]][[/>>url:https://www.ilastik.org/]]
42 -)))
43 -
44 44