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1	1	(% style="text-align:center" %)
2	2	[[image:QUINT_workflow_pic.png]]
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4		-== (% style="color:#c0392b" %)**Workflow Description**(%%) ==
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	5	+==== (% style="color:#c0392b" %)**Workflow Description**(%%) ====
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6	6	The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software:
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8	8	1. [[(% style="color:#2980b9" %)//ilastik//>>doc:.3\. Image segmentation with ilastik.WebHome]](%%) allows the extraction of labelled features such as cells by segmentation.
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12	12	In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
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14		-[[[[image:Youtube_QUINT.PNG||height="282" style="float:left" width="500"]]Youtube video>>https://www.youtube.com/watch?v=yPkAbSfla_c]]
	15	+[[Youtube video>>https://www.youtube.com/watch?v=yPkAbSfla_c]]
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40	40	==== (% style="color:#c0392b" %)**Workflow highlights**(%%) ====
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42	42	* The QUINT workflow is semi-automated, combining three open-source software that can be operated without scripting knowledge.
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55	55	[[https:~~/~~/www.ilastik.org>>url:https://www.ilastik.org/]][[/>>url:https://www.ilastik.org/]]
56	56	)))
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