Last modified by puchades on 2022/11/02 10:16
From version 43.2
edited by puchades
on 2020/09/23 13:23
Change comment: There is no comment for this version
To version 37.1
edited by puchades
on 2020/04/07 15:41
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -23,11 +23,15 @@
23 23  
24 24  
25 25  
26 -QUINT workflow video
26 +==== ====
27 27  
28 +
29 +
30 +
31 +
28 28  ==== (% style="color:#c0392b" %)**Workflow highlights**(%%) ====
29 29  
30 -* The semi-automated QUINT workflow uses open access software that can be operated without any scripting knowledge.
34 +* The semi-automated QUINT workflow combines open access software that can be operated without scripting knowledge..
31 31  
32 32  (((
33 33  * As the quantifications are performed in regions defined by a reference atlas, the region definitions are standardized, allowing comparisons of data from different laboratories.
... ... @@ -34,10 +34,13 @@
34 34  
35 35  ==== (% style="color:#c0392b" %)**References**(%%) ====
36 36  
37 -* Yates SC et al. 2019. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: [[10.3389/fninf.2019.00075>>https://www.frontiersin.org/articles/10.3389/fninf.2019.00075/full]]
38 -* Groeneboom NE, Yates SC, Puchades MA and Bjaalie JG (2020) Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. //Front. Neuroinform.// 14:37. doi: 10.3389/fninf.2020.00037
39 -* [[Nutil>>https://github.com/Neural-Systems-at-UIO/nutil]]
40 -* [[QuickNII>>https://www.nitrc.org/projects/quicknii]]
41 -* [[VisuAlign>>https://www.nitrc.org/projects/visualign/]]
42 -* [[ilastik>>https://www.ilastik.org/]]
41 +Yates SC et al. 2019. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: 10.3389/fninf.2019.00075
42 +
43 +[[https:~~/~~/www.nitrc.org/projects/nutil>>url:https://www.nitrc.org/projects/nutil/]][[/>>url:https://www.nitrc.org/projects/quicknii]]
44 +
45 +[[https:~~/~~/www.nitrc.org/projects/quicknii>>https://www.nitrc.org/projects/quicknii]]
46 +
47 +[[https:~~/~~/www.nitrc.org/projects/visualign/>>url:https://www.nitrc.org/projects/visualign/]]
48 +
49 +[[https:~~/~~/www.ilastik.org>>url:https://www.ilastik.org/]][[/>>url:https://www.ilastik.org/]]
43 43  )))
XWiki.XWikiRights[5]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Levels
... ... @@ -1,1 +1,0 @@
1 -view
Users
... ... @@ -1,1 +1,0 @@
1 -XWiki.XWikiGuest
XWiki.XWikiRights[6]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Groups
... ... @@ -1,1 +1,0 @@
1 -XWiki.XWikiAllGroup
Levels
... ... @@ -1,1 +1,0 @@
1 -view
XWiki.XWikiRights[3]
Allow/Deny
... ... @@ -1,0 +1,1 @@
1 +Allow
Levels
... ... @@ -1,0 +1,1 @@
1 +view
Users
... ... @@ -1,0 +1,1 @@
1 +XWiki.XWikiGuest
XWiki.XWikiRights[4]
Allow/Deny
... ... @@ -1,0 +1,1 @@
1 +Allow
Groups
... ... @@ -1,0 +1,1 @@
1 +XWiki.XWikiAllGroup
Levels
... ... @@ -1,0 +1,1 @@
1 +view