Last modified by puchades on 2022/11/02 10:16
From version 45.1
edited by puchades
on 2020/09/23 13:26
Change comment: There is no comment for this version
To version 36.3
edited by puchades
on 2020/04/07 15:39
Change comment: There is no comment for this version

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23 23  
24 24  
25 25  
26 +==== ====
26 26  
27 27  
28 28  
29 29  
30 30  
31 -QUINT workflow video
32 -
33 33  ==== (% style="color:#c0392b" %)**Workflow highlights**(%%) ====
34 34  
35 -* The semi-automated QUINT workflow uses open access software that can be operated without any scripting knowledge.
34 +* The QUINT workflow is semi-automated, combining three open-source software that can be operated without scripting knowledge.
36 36  
37 37  (((
38 38  * As the quantifications are performed in regions defined by a reference atlas, the region definitions are standardized, allowing comparisons of data from different laboratories.
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39 39  
40 40  ==== (% style="color:#c0392b" %)**References**(%%) ====
41 41  
42 -* Yates SC et al. 2019. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: [[10.3389/fninf.2019.00075>>https://www.frontiersin.org/articles/10.3389/fninf.2019.00075/full]]
43 -* Groeneboom NE, Yates SC, Puchades MA and Bjaalie JG (2020) Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. //Front. Neuroinform.// 14:37. doi: 10.3389/fninf.2020.00037
44 -* [[Nutil>>https://github.com/Neural-Systems-at-UIO/nutil]]
45 -* [[QuickNII>>https://www.nitrc.org/projects/quicknii]]
46 -* [[VisuAlign>>https://www.nitrc.org/projects/visualign/]]
47 -* [[ilastik>>https://www.ilastik.org/]]
41 +Yates SC et al. 2019. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: 10.3389/fninf.2019.00075
42 +
43 +[[www.nitrc.org/projects/nutil>>url:https://www.nitrc.org/projects/nutil/]][[/>>url:https://www.nitrc.org/projects/quicknii]]
44 +
45 +[[https:~~/~~/www.nitrc.org/projects/quicknii>>https://www.nitrc.org/projects/quicknii]]
46 +
47 +[[https:~~/~~/www.ilastik.org>>url:https://www.ilastik.org/]][[/>>url:https://www.ilastik.org/]]
48 48  )))
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