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Last modified by puchades on 2022/11/02 10:16
From version 48.1
edited by puchades
on 2020/09/24 09:55
Change comment: There is no comment for this version
To version 37.1
edited by puchades
on 2020/04/07 15:41
Change comment: There is no comment for this version

Summary

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2 +[[image:QUINT_workflow_pic.png||height="394" width="1011"]]
2 2  
3 3  == (% style="color:#c0392b" %)**Workflow Description**(%%) ==
4 4  
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22 22  
23 23  
24 24  
26 +==== ====
25 25  
26 26  
27 27  
28 28  
29 29  
30 -QUINT workflow video
31 -
32 32  ==== (% style="color:#c0392b" %)**Workflow highlights**(%%) ====
33 33  
34 -* The semi-automated QUINT workflow uses open access software that can be operated without any scripting knowledge.
34 +* The semi-automated QUINT workflow combines open access software that can be operated without scripting knowledge..
35 35  
36 36  (((
37 37  * As the quantifications are performed in regions defined by a reference atlas, the region definitions are standardized, allowing comparisons of data from different laboratories.
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38 38  
39 39  ==== (% style="color:#c0392b" %)**References**(%%) ====
40 40  
41 -* Yates SC et al. 2019. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: [[10.3389/fninf.2019.00075>>https://www.frontiersin.org/articles/10.3389/fninf.2019.00075/full]]
42 -* Groeneboom NE, Yates SC, Puchades MA and Bjaalie JG (2020) Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. //Front. Neuroinform.// 14:37. doi: 10.3389/fninf.2020.00037
43 -* [[Nutil>>https://github.com/Neural-Systems-at-UIO/nutil]]
44 -* [[QuickNII>>https://www.nitrc.org/projects/quicknii]]
45 -* [[VisuAlign>>https://www.nitrc.org/projects/visualign/]]
46 -* [[ilastik>>https://www.ilastik.org/]]
41 +Yates SC et al. 2019. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: 10.3389/fninf.2019.00075
42 +
43 +[[https:~~/~~/www.nitrc.org/projects/nutil>>url:https://www.nitrc.org/projects/nutil/]][[/>>url:https://www.nitrc.org/projects/quicknii]]
44 +
45 +[[https:~~/~~/www.nitrc.org/projects/quicknii>>https://www.nitrc.org/projects/quicknii]]
46 +
47 +[[https:~~/~~/www.nitrc.org/projects/visualign/>>url:https://www.nitrc.org/projects/visualign/]]
48 +
49 +[[https:~~/~~/www.ilastik.org>>url:https://www.ilastik.org/]][[/>>url:https://www.ilastik.org/]]
47 47  )))
QUINT_workflow_Plaques.png
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