Changes for page QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain
Last modified by puchades on 2022/11/02 10:16
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... ... @@ -1,10 +1,10 @@ 1 + 2 + 1 1 (% class="jumbotron" %) 2 2 ((( 3 3 (% class="container" %) 4 4 ((( 5 -= My Collab's Extended Title = 6 - 7 -My collab's subtitle 7 +== QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain == 8 8 ))) 9 9 ))) 10 10 ... ... @@ -12,6 +12,12 @@ 12 12 ((( 13 13 (% class="col-xs-12 col-sm-8" %) 14 14 ((( 15 +(% class="wikigeneratedid" %) 16 + 17 + 18 +(% class="wikigeneratedid" id="H" %) 19 +The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software. The first – ilastik - allows the extraction of labelled features such as cells by segmentation. The second – QuickNII - generates atlas maps customised to match the proportions and cutting plane of the brain sections. The third – Nutil – enables quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII. In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions. 20 + 15 15 = What can I find here? = 16 16 17 17 * Notice how the table of contents on the right ... ... @@ -22,14 +22,4 @@ 22 22 23 23 Describe the audience of this collab. 24 24 ))) 25 - 26 - 27 -(% class="col-xs-12 col-sm-4" %) 28 -((( 29 -{{box title="**Contents**"}} 30 -{{toc/}} 31 -{{/box}} 32 - 33 - 34 34 ))) 35 -)))