Last modified by puchades on 2022/11/02 10:16
From version 53.2
edited by puchades
on 2020/09/24 11:37
Change comment: There is no comment for this version
To version 55.1
edited by puchades
on 2020/09/24 11:43
Change comment: There is no comment for this version

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35 35  
36 36  == (% style="color:#c0392b" %)**Workflow highlights**(%%) ==
37 37  
38 -* The semi-automated QUINT workflow uses open access software that can be operated without any scripting knowledge.
38 +(% class="box successmessage" %)
39 +(((
40 +The semi-automated QUINT workflow uses open access software that can be operated without any scripting knowledge.
41 +)))
39 39  
40 40  (((
41 -* As the quantifications are performed in regions defined by a reference atlas, the region definitions are standardized, allowing comparisons of data from different laboratories.
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45 +(((
46 +As the quantifications are performed in regions defined by a reference atlas, the region definitions are standardized, allowing comparisons of data from different laboratories.
47 +)))
42 42  
43 43  ==== (% style="color:#c0392b" %)**References**(%%) ====
44 44  
45 45  * Yates SC et al. 2019. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: [[10.3389/fninf.2019.00075>>https://www.frontiersin.org/articles/10.3389/fninf.2019.00075/full]]
46 46  * Groeneboom NE, Yates SC, Puchades MA and Bjaalie JG (2020) Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. //Front. Neuroinform.// 14:37. doi: [[10.3389/fninf.2020.00037>>https://www.frontiersin.org/articles/10.3389/fninf.2020.00037/full]]
53 +* Berg S, Kutra D, Kroeger T, et al. & Kreshuk A (2019) ilastik: interactive machine learning for (bio)image analysis. Nat Methods. 16:1226-1232. doi: [[10.1038/s41592-019-0582-9>>attach:https://www.nature.com/articles/s41592-019-0582-9]]
54 +* (((
55 +Puchades MA et al. (2019) Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. PlosOne. 14(5): e0216796. doi: [[10.1371/journal.pone.0216796>>https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0216796]]
56 +)))
57 +
58 +==== (% style="color:#c0392b" %)**User support**(%%) ====
59 +
47 47  * [[Nutil>>https://github.com/Neural-Systems-at-UIO/nutil]]
48 48  * [[QuickNII>>https://www.nitrc.org/projects/quicknii]]
49 49  * [[VisuAlign>>https://www.nitrc.org/projects/visualign/]]