Last modified by puchades on 2022/11/02 10:16
From version 6.1
edited by sharoncy
on 2020/03/09 13:15
Change comment: There is no comment for this version
To version 11.1
edited by sharoncy
on 2020/03/09 14:04
Change comment: There is no comment for this version

Summary

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7 -== QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain ==
5 +== (% style="color:#16a085" %)**QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain**(%%) ==
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7 +(% style="color:#999999" %)Neural Systems Laboratory, University of Oslo
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17 -= What can I find here? =
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19 -* Notice how the table of contents on the right
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14 +==== (% style="color:#c0392b" %)Workflow Description(%%) ====
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25 -Describe the audience of this collab.
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16 +The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software:
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18 +1. (% style="color:#2980b9" %)//**ilastik**//(%%) allows the extraction of labelled features such as cells by segmentation.
19 +1. (% style="color:#2980b9" %)**//QuickNII//**(%%) generates atlas maps customised to match the proportions and cutting plane of the brain sections.
20 +1. (% style="color:#2980b9" %)**//Nutil//**(%%) enables image transformations, in addition to quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII.
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31 -{{box title="**Contents**"}}
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22 +In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
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