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Last modified by puchades on 2022/11/02 10:16
From version 62.2
edited by annedevismes
on 2021/06/08 10:23
Change comment: There is no comment for this version
To version 72.2
edited by puchades
on 2022/02/07 13:12
Change comment: There is no comment for this version

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1 -[[image:QUINT_workflow_Plaques.png||style="float:left"]]
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2 +(((
3 +==== This collab is describing the use of the software toolchain version of the QUINT workflow. The integrated QUINT service will soon be available here. ====
4 +)))
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6 +[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]]
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8 +== ==
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24 +== ==
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27 +==== Online documentation ====
28 +
29 +[[QuickNII user documentation>>https://quicknii.readthedocs.io/en/latest/index.html]]
30 +
31 +[[VisuAlign user documentation>>https://visualign.readthedocs.io/en/latest/index.html]]
32 +
33 +[[Ilastik user documentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]]
34 +
35 +[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]]                                  
36 +
37 +== ==
38 +
3 3  == (% style="color:#c0392b" %)**Description**(%%) ==
4 4  
5 5  **The QUINT workflow enables an atlas-based analysis of extracted features from histological image sections from the rodent brain by using 3D reference atlases. **
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16 16  In combination, the tools facilitate semi-automated quantification, eliminating the need for more time-consuming methods such as stereological analysis with manual delineation of brain regions.
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18 -[[[[image:Youtube_QUINT.PNG||height="282" style="float:left" width="500"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
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55 +[[[[image:Youtube_QUINT.PNG||height="310" style="float:right" width="550"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
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57 +[[[[image:Quint tutorial video pic.png||height="339" style="float:left" width="550"]]>>https://www.youtube.com/watch?v=n-gQigcGMJ0]]
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34 34  QUINT workflow video
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36 36  == (% style="color:#c0392b" %)**Workflow highlights**(%%) ==
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38 38  (% class="box successmessage" %)
Quint tutorial video pic.png
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