Attention: The Collaboratory IAM will down for up to 1 hour on Monday, the 7th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour. Any and all services, which require a user login with an EBRAINS account, will be un-available during that time


Last modified by puchades on 2022/11/02 10:16
From version 62.2
edited by annedevismes
on 2021/06/08 10:23
Change comment: There is no comment for this version
To version 73.1
edited by puchades
on 2022/02/07 13:12
Change comment: There is no comment for this version

Summary

Details

Page properties
Author
... ... @@ -1,1 +1,1 @@
1 -XWiki.annedevismes
1 +XWiki.puchades
Content
... ... @@ -1,5 +1,41 @@
1 -[[image:QUINT_workflow_Plaques.png||style="float:left"]]
1 +(% class="box infomessage" %)
2 +(((
3 +==== This collab is describing the use of the software toolchain version of the QUINT workflow. The integrated QUINT service will soon be available [[here.>>https://wiki.ebrains.eu/bin/edit/Collabs/quint-demo/WebHome]] ====
4 +)))
2 2  
6 +[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]]
7 +
8 +== ==
9 +
10 +== ==
11 +
12 +== ==
13 +
14 +== ==
15 +
16 +== ==
17 +
18 +== ==
19 +
20 +== ==
21 +
22 +== ==
23 +
24 +== ==
25 +
26 +
27 +==== Online documentation ====
28 +
29 +[[QuickNII user documentation>>https://quicknii.readthedocs.io/en/latest/index.html]]
30 +
31 +[[VisuAlign user documentation>>https://visualign.readthedocs.io/en/latest/index.html]]
32 +
33 +[[Ilastik user documentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]]
34 +
35 +[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]]                                  
36 +
37 +== ==
38 +
3 3  == (% style="color:#c0392b" %)**Description**(%%) ==
4 4  
5 5  **The QUINT workflow enables an atlas-based analysis of extracted features from histological image sections from the rodent brain by using 3D reference atlases. **
... ... @@ -15,9 +15,10 @@
15 15  
16 16  In combination, the tools facilitate semi-automated quantification, eliminating the need for more time-consuming methods such as stereological analysis with manual delineation of brain regions.
17 17  
18 -[[[[image:Youtube_QUINT.PNG||height="282" style="float:left" width="500"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
19 19  
55 +[[[[image:Youtube_QUINT.PNG||height="310" style="float:right" width="550"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
20 20  
57 +[[[[image:Quint tutorial video pic.png||height="339" style="float:left" width="550"]]>>https://www.youtube.com/watch?v=n-gQigcGMJ0]]
21 21  
22 22  
23 23  
... ... @@ -31,8 +31,17 @@
31 31  
32 32  
33 33  
71 +
72 +
73 +
74 +
75 +
76 +
77 +
78 +
34 34  QUINT workflow video
35 35  
81 +
36 36  == (% style="color:#c0392b" %)**Workflow highlights**(%%) ==
37 37  
38 38  (% class="box successmessage" %)
Quint tutorial video pic.png
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.puchades
Size
... ... @@ -1,0 +1,1 @@
1 +503.2 KB
Content