Attention: The Collaboratory IAM will down for up to 1 hour on Monday, the 7th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour. Any and all services, which require a user login with an EBRAINS account, will be un-available during that time


Last modified by puchades on 2022/11/02 10:16
From version 64.1
edited by sharoncy
on 2021/10/18 09:39
Change comment: There is no comment for this version
To version 73.1
edited by puchades
on 2022/02/07 13:12
Change comment: There is no comment for this version

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1 +XWiki.puchades
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1 1  (% class="box infomessage" %)
2 2  (((
3 -Online documentation: - [[https:~~/~~/quicknii.readthedocs.io/en/latest/index.html>>https://quicknii.readthedocs.io/en/latest/index.html]] [[-https:~~/~~/visualign.readthedocs.io/en/latest/index.html#>>https://visualign.readthedocs.io/en/latest/index.html#]][[ -https:~~/~~/nutil.readthedocs.io/en/latest/index.html>>https://nutil.readthedocs.io/en/latest/index.html]]                                                                                        
3 +==== This collab is describing the use of the software toolchain version of the QUINT workflow. The integrated QUINT service will soon be available [[here.>>https://wiki.ebrains.eu/bin/edit/Collabs/quint-demo/WebHome]] ====
4 4  )))
5 5  
6 -Please, address your questions about our tools and workflows to [[https:~~/~~/ebrains.eu/support/>>https://ebrains.eu/support/]].
6 +[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]]
7 7  
8 -[[image:User_support_Ebrains.png]]
8 +== ==
9 9  
10 +== ==
10 10  
11 -[[image:QUINT_workflow_Plaques.png||style="float:left"]]
12 +== ==
12 12  
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24 +== ==
25 +
26 +
27 +==== Online documentation ====
28 +
29 +[[QuickNII user documentation>>https://quicknii.readthedocs.io/en/latest/index.html]]
30 +
31 +[[VisuAlign user documentation>>https://visualign.readthedocs.io/en/latest/index.html]]
32 +
33 +[[Ilastik user documentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]]
34 +
35 +[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]]                                  
36 +
37 +== ==
38 +
13 13  == (% style="color:#c0392b" %)**Description**(%%) ==
14 14  
15 15  **The QUINT workflow enables an atlas-based analysis of extracted features from histological image sections from the rodent brain by using 3D reference atlases. **
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26 26  In combination, the tools facilitate semi-automated quantification, eliminating the need for more time-consuming methods such as stereological analysis with manual delineation of brain regions.
27 27  
28 -[[[[image:Youtube_QUINT.PNG||height="282" style="float:left" width="500"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
29 29  
55 +[[[[image:Youtube_QUINT.PNG||height="310" style="float:right" width="550"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
30 30  
57 +[[[[image:Quint tutorial video pic.png||height="339" style="float:left" width="550"]]>>https://www.youtube.com/watch?v=n-gQigcGMJ0]]
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44 44  QUINT workflow video
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81 +
46 46  == (% style="color:#c0392b" %)**Workflow highlights**(%%) ==
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48 48  (% class="box successmessage" %)
Quint tutorial video pic.png
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