Warning: The EBRAINS Drive and EBRAINS Lab will down on Tuesday, the 8th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour.


Last modified by puchades on 2022/11/02 10:16
From version 64.1
edited by sharoncy
on 2021/10/18 09:39
Change comment: There is no comment for this version
To version 79.1
edited by sharoncy
on 2022/02/26 21:11
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -1,15 +1,43 @@
1 1  (% class="box infomessage" %)
2 2  (((
3 -Online documentation: - [[https:~~/~~/quicknii.readthedocs.io/en/latest/index.html>>https://quicknii.readthedocs.io/en/latest/index.html]] [[-https:~~/~~/visualign.readthedocs.io/en/latest/index.html#>>https://visualign.readthedocs.io/en/latest/index.html#]][[ -https:~~/~~/nutil.readthedocs.io/en/latest/index.html>>https://nutil.readthedocs.io/en/latest/index.html]]                                                                                        
3 +==== This collab describes the use of the desktop version of the QUINT workflow. The integrated QUINT online service will soon be available [[here.>>https://wiki.ebrains.eu/bin/edit/Collabs/quint-demo/WebHome]] ====
4 4  )))
5 5  
6 -Please, address your questions about our tools and workflows to [[https:~~/~~/ebrains.eu/support/>>https://ebrains.eu/support/]].
6 +[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]]
7 7  
8 -[[image:User_support_Ebrains.png]]
8 +== ==
9 9  
10 +== ==
10 10  
11 -[[image:QUINT_workflow_Plaques.png||style="float:left"]]
12 +== ==
12 12  
14 +== ==
15 +
16 +== ==
17 +
18 +== ==
19 +
20 +== ==
21 +
22 +== ==
23 +
24 +== ==
25 +
26 +
27 +==== Online documentation ====
28 +
29 +[[QuickNII user documentation>>https://quicknii.readthedocs.io/en/latest/index.html]]
30 +
31 +[[VisuAlign user documentation>>https://visualign.readthedocs.io/en/latest/index.html]]
32 +
33 +[[Ilastik user documentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]]
34 +
35 +[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]] 
36 +
37 +[[MeshView user documentation>>https://meshview-for-brain-atlases.readthedocs.io]]                               
38 +
39 +== ==
40 +
13 13  == (% style="color:#c0392b" %)**Description**(%%) ==
14 14  
15 15  **The QUINT workflow enables an atlas-based analysis of extracted features from histological image sections from the rodent brain by using 3D reference atlases. **
... ... @@ -25,8 +25,9 @@
25 25  
26 26  In combination, the tools facilitate semi-automated quantification, eliminating the need for more time-consuming methods such as stereological analysis with manual delineation of brain regions.
27 27  
28 -[[[[image:Youtube_QUINT.PNG||height="282" style="float:left" width="500"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
56 +[[[[image:Youtube_QUINT.PNG||height="281" style="float:right" width="499"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
29 29  
58 +[[[[image:Quint tutorial video pic.png||height="300" style="float:left" width="487"]]>>https://www.youtube.com/watch?v=n-gQigcGMJ0]]
30 30  
31 31  
32 32  
... ... @@ -38,11 +38,9 @@
38 38  
39 39  
40 40  
41 -
42 -
43 -
44 44  QUINT workflow video
45 45  
72 +
46 46  == (% style="color:#c0392b" %)**Workflow highlights**(%%) ==
47 47  
48 48  (% class="box successmessage" %)
Quint tutorial video pic.png
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.puchades
Size
... ... @@ -1,0 +1,1 @@
1 +503.2 KB
Content