Changes for page QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain
Last modified by puchades on 2022/11/02 10:16
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... ... @@ -1,35 +1,39 @@ 1 1 (% class="box infomessage" %) 2 2 ((( 3 -Online documentation: - 3 +==== This collab is describing the use of the desktop version of the QUINT workflow. The integrated QUINT online service will soon be available [[here.>>https://wiki.ebrains.eu/bin/edit/Collabs/quint-demo/WebHome]] ==== 4 +))) 4 4 5 -[[ QuickNII userdocumentation>>https://quicknii.readthedocs.io/en/latest/index.html]]6 +[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]] 6 6 7 - [[VisuAlignuserdocumentation>>https://visualign.readthedocs.io/en/latest/index.html]]8 +== == 8 8 9 - [[Ilastikuserdocumentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]]10 +== == 10 10 11 -[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]] 12 -))) 12 +== == 13 13 14 +== == 14 14 15 -[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]] 16 - 17 -(% class="wikigeneratedid" %) 18 18 == == 19 19 20 -(% class="wikigeneratedid" %) 21 21 == == 22 22 23 -(% class="wikigeneratedid" %) 24 24 == == 25 25 26 -(% class="wikigeneratedid" %) 27 27 == == 28 28 29 -(% class="wikigeneratedid" %) 30 30 == == 31 31 32 -(% class="wikigeneratedid" %) 26 + 27 +==== Online documentation ==== 28 + 29 +[[QuickNII user documentation>>https://quicknii.readthedocs.io/en/latest/index.html]] 30 + 31 +[[VisuAlign user documentation>>https://visualign.readthedocs.io/en/latest/index.html]] 32 + 33 +[[Ilastik user documentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]] 34 + 35 +[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]] 36 + 33 33 == == 34 34 35 35 == (% style="color:#c0392b" %)**Description**(%%) == ... ... @@ -47,9 +47,10 @@ 47 47 48 48 In combination, the tools facilitate semi-automated quantification, eliminating the need for more time-consuming methods such as stereological analysis with manual delineation of brain regions. 49 49 50 -[[[[image:Youtube_QUINT.PNG||height="282" style="float:left" width="500"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]] 51 51 55 +[[[[image:Youtube_QUINT.PNG||height="310" style="float:right" width="550"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]] 52 52 57 +[[[[image:Quint tutorial video pic.png||height="339" style="float:left" width="550"]]>>https://www.youtube.com/watch?v=n-gQigcGMJ0]] 53 53 54 54 55 55 ... ... @@ -63,8 +63,17 @@ 63 63 64 64 65 65 71 + 72 + 73 + 74 + 75 + 76 + 77 + 78 + 66 66 QUINT workflow video 67 67 81 + 68 68 == (% style="color:#c0392b" %)**Workflow highlights**(%%) == 69 69 70 70 (% class="box successmessage" %)
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