Changes for page QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain
Last modified by puchades on 2022/11/02 10:16
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... ... @@ -1,19 +1,18 @@ 1 1 (% class="box infomessage" %) 2 2 ((( 3 -==== Online documentation ==== 3 +==== This collab is describing the use of the desktop version of the QUINT workflow. The integrated QUINT online service will soon be available [[here.>>https://wiki.ebrains.eu/bin/edit/Collabs/quint-demo/WebHome]] ==== 4 +))) 4 4 5 -[[ QuickNII userdocumentation>>https://quicknii.readthedocs.io/en/latest/index.html]]6 +[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]] 6 6 7 - [[VisuAlignuserdocumentation>>https://visualign.readthedocs.io/en/latest/index.html]]8 +== == 8 8 9 - [[Ilastikuserdocumentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]]10 +== == 10 10 11 -[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]] 12 -))) 12 +== == 13 13 14 +== == 14 14 15 -[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]] 16 - 17 17 == == 18 18 19 19 == == ... ... @@ -24,6 +24,17 @@ 24 24 25 25 == == 26 26 26 + 27 +==== Online documentation ==== 28 + 29 +[[QuickNII user documentation>>https://quicknii.readthedocs.io/en/latest/index.html]] 30 + 31 +[[VisuAlign user documentation>>https://visualign.readthedocs.io/en/latest/index.html]] 32 + 33 +[[Ilastik user documentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]] 34 + 35 +[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]] 36 + 27 27 == == 28 28 29 29 == (% style="color:#c0392b" %)**Description**(%%) == ... ... @@ -41,10 +41,10 @@ 41 41 42 42 In combination, the tools facilitate semi-automated quantification, eliminating the need for more time-consuming methods such as stereological analysis with manual delineation of brain regions. 43 43 54 +[[[[image:Youtube_QUINT.PNG||height="281" style="float:right" width="499"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]] 44 44 45 -[[[[image: Youtube_QUINT.PNG||height="310" style="float:right" width="550"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]56 +[[[[image:Quint tutorial video pic.png||height="300" style="float:left" width="487"]]>>https://www.youtube.com/watch?v=n-gQigcGMJ0]] 46 46 47 -[[image:Quint tutorial video pic.png||height="339" style="float:left" width="550"]] 48 48 49 49 50 50 ... ... @@ -55,10 +55,6 @@ 55 55 56 56 57 57 58 - 59 - 60 - 61 - 62 62 QUINT workflow video 63 63 64 64