Attention: The Collaboratory IAM will down for up to 1 hour on Monday, the 7th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour. Any and all services, which require a user login with an EBRAINS account, will be un-available during that time


Last modified by puchades on 2022/11/02 10:16
From version 72.2
edited by puchades
on 2022/02/07 13:12
Change comment: There is no comment for this version
To version 64.1
edited by sharoncy
on 2021/10/18 09:39
Change comment: There is no comment for this version

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1 +XWiki.sharoncy
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2 2  (((
3 -==== This collab is describing the use of the software toolchain version of the QUINT workflow. The integrated QUINT service will soon be available here. ====
3 +Online documentation: - [[https:~~/~~/quicknii.readthedocs.io/en/latest/index.html>>https://quicknii.readthedocs.io/en/latest/index.html]] [[-https:~~/~~/visualign.readthedocs.io/en/latest/index.html#>>https://visualign.readthedocs.io/en/latest/index.html#]][[ -https:~~/~~/nutil.readthedocs.io/en/latest/index.html>>https://nutil.readthedocs.io/en/latest/index.html]]                                                                                        
4 4  )))
5 5  
6 -[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]]
6 +Please, address your questions about our tools and workflows to [[https:~~/~~/ebrains.eu/support/>>https://ebrains.eu/support/]].
7 7  
8 -== ==
8 +[[image:User_support_Ebrains.png]]
9 9  
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11 +[[image:QUINT_workflow_Plaques.png||style="float:left"]]
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25 -
26 -
27 -==== Online documentation ====
28 -
29 -[[QuickNII user documentation>>https://quicknii.readthedocs.io/en/latest/index.html]]
30 -
31 -[[VisuAlign user documentation>>https://visualign.readthedocs.io/en/latest/index.html]]
32 -
33 -[[Ilastik user documentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]]
34 -
35 -[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]]                                  
36 -
37 -== ==
38 -
39 39  == (% style="color:#c0392b" %)**Description**(%%) ==
40 40  
41 41  **The QUINT workflow enables an atlas-based analysis of extracted features from histological image sections from the rodent brain by using 3D reference atlases. **
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52 52  In combination, the tools facilitate semi-automated quantification, eliminating the need for more time-consuming methods such as stereological analysis with manual delineation of brain regions.
53 53  
28 +[[[[image:Youtube_QUINT.PNG||height="282" style="float:left" width="500"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
54 54  
55 -[[[[image:Youtube_QUINT.PNG||height="310" style="float:right" width="550"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
56 56  
57 -[[[[image:Quint tutorial video pic.png||height="339" style="float:left" width="550"]]>>https://www.youtube.com/watch?v=n-gQigcGMJ0]]
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79 79  QUINT workflow video
80 80  
81 -
82 82  == (% style="color:#c0392b" %)**Workflow highlights**(%%) ==
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84 84  (% class="box successmessage" %)
Quint tutorial video pic.png
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