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7		-== QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain ==
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19		-The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software. The first – ilastik - allows the extraction of labelled features such as cells by segmentation. The second – QuickNII - generates atlas maps customised to match the proportions and cutting plane of the brain sections. The third – Nutil – enables quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII. In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
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21	21	= What can I find here? =
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23	23	* Notice how the table of contents on the right
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29	29	Describe the audience of this collab.
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	29	+{{box title="**Contents**"}}
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