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Last modified by puchades on 2022/11/02 10:16
From version 82.1
edited by puchades
on 2022/09/23 09:38
Change comment: There is no comment for this version
To version 62.2
edited by annedevismes
on 2021/06/08 10:23
Change comment: There is no comment for this version

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3 -==== This collab describes the use of the desktop version of the QUINT workflow. The integrated QUINT online service will soon be available [[here.>>https://wiki.ebrains.eu/bin/edit/Collabs/quint-demo/WebHome]] ====
4 -)))
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6 -[[image:QUINT_workflow_Plaques.png||height="470" style="float:left" width="1277"]]
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8 -== ==
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24 -== ==
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26 -
27 -==== Online documentation ====
28 -
29 -[[QUINT workflow user documentation>>https://quint-workflow.readthedocs.io]]
30 -
31 -[[QuickNII user documentation>>https://quicknii.readthedocs.io/en/latest/index.html]]
32 -
33 -[[VisuAlign user documentation>>https://visualign.readthedocs.io/en/latest/index.html]]
34 -
35 -[[Ilastik user documentation>>https://nutil.readthedocs.io/en/latest/Ilastik.html]]
36 -
37 -[[Nutil user documentation>>https://nutil.readthedocs.io/en/latest/index.html]] 
38 -
39 -[[MeshView user documentation>>https://meshview-for-brain-atlases.readthedocs.io]]                               
40 -
41 -== ==
42 -
43 43  == (% style="color:#c0392b" %)**Description**(%%) ==
44 44  
45 45  **The QUINT workflow enables an atlas-based analysis of extracted features from histological image sections from the rodent brain by using 3D reference atlases. **
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56 56  In combination, the tools facilitate semi-automated quantification, eliminating the need for more time-consuming methods such as stereological analysis with manual delineation of brain regions.
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58 -[[[[image:Youtube_QUINT.PNG||height="281" style="float:right" width="499"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
18 +[[[[image:Youtube_QUINT.PNG||height="282" style="float:left" width="500"]]>>https://www.youtube.com/watch?v=8oeg3qTzLnE]]
59 59  
60 -[[[[image:Quint tutorial video pic.png||height="300" style="float:left" width="487"]]>>https://www.youtube.com/watch?v=n-gQigcGMJ0]]
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71 71  
72 -QUINT workflow video
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34 +QUINT workflow video
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75 75  == (% style="color:#c0392b" %)**Workflow highlights**(%%) ==
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77 77  (% class="box successmessage" %)
Quint tutorial video pic.png
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