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Page properties

Content

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3	3	(% class="jumbotron" %)
4	4	(((
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6	6	(((
7		-== (% style="color:#16a085" %)**QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain**(%%) ==
	5	+= My Collab's Extended Title =
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9		-(% style="color:#999999" %)Neural Systems Laboratory, University of Oslo
	7	+My collab's subtitle
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13		-==== ====
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	15	+= What can I find here? =
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	17	+* Notice how the table of contents on the right
	18	+* is automatically updated
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16		-==== (% style="color:#c0392b" %)Workflow Description(%%) ====
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18		-The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software:
	23	+Describe the audience of this collab.
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20		-1. ilastik allows the extraction of labelled features such as cells by segmentation.
21		-1. QuickNII generates atlas maps customised to match the proportions and cutting plane of the brain sections.
22		-1. Nutil enables quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII.
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24		-In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
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	29	+{{box title="**Contents**"}}
	30	+{{toc/}}
	31	+{{/box}}
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	34	+)))
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