Last modified by puchades on 2022/11/02 10:16
From version 9.1
edited by sharoncy
on 2020/03/09 14:01
Change comment: There is no comment for this version
To version 8.1
edited by sharoncy
on 2020/03/09 13:53
Change comment: There is no comment for this version

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7 -== (% style="color:#16a085" %)**QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain**(%%) ==
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9 -(% style="color:#999999" %)Neural Systems Laboratory, University of Oslo
7 +== QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain ==
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19 +The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software. The first – ilastik - allows the extraction of labelled features such as cells by segmentation. The second – QuickNII - generates atlas maps customised to match the proportions and cutting plane of the brain sections. The third – Nutil – enables quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII. In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
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16 -==== (% style="color:#c0392b" %)Workflow Description(%%) ====
21 += What can I find here? =
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18 -The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software:
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20 -1. ilastik allows the extraction of labelled features such as cells by segmentation.
21 -1. QuickNII generates atlas maps customised to match the proportions and cutting plane of the brain sections.
22 -1. Nutil enables quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII.
27 += Who has access? =
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24 -In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions.
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29 +Describe the audience of this collab.
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