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| 7 | == QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images from Rodent Brain == | ||
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| 19 | The QUINT workflow enables the quantification and spatial analysis of labelled features in histological images of rodent brain sections based on reference atlases of the brain. It utilises three open-source software. The first – ilastik - allows the extraction of labelled features such as cells by segmentation. The second – QuickNII - generates atlas maps customised to match the proportions and cutting plane of the brain sections. The third – Nutil – enables quantification and spatial analysis of features by drawing on the output of ilastik and QuickNII. In combination, the tools facilitate semi-automated quantification, eliminating the need for more time consuming methods such as stereological analysis with manual delineation of brain regions. | ||
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| 21 | = What can I find here? = | ||
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| 23 | * Notice how the table of contents on the right | ||
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| 27 | = Who has access? = | ||
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| 29 | Describe the audience of this collab. | ||
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