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Last modified by puchades on 2022/02/18 13:55
From version 21.2
edited by puchades
on 2020/04/07 16:12
Change comment: There is no comment for this version
To version 21.1
edited by puchades
on 2020/04/07 16:07
Change comment: There is no comment for this version

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28 28  (% class="box infomessage" %)
29 29  (((
30 -The alignment procedure consists of two main tasks:
31 -
32 -1. Determine the dorsoventral and mediolateral cutting angle of the section series, apply same angles for all slices.
33 -1. Adjust the atlas slices generated along these angles to match individual sections.
30 +(% style="color:#27ae60" %)The idea is to determine the cutting angles (dorso-ventral and medio-lateral) for the whole series as these should be consistent throughout. Once found in a few sections, apply the same angles to the rest of the series.
34 34  )))
35 35  
36 -=== (% style="color:#c0392b" %)A) To determine the cutting angles:(%%) ===
33 +**The basic steps are:**
37 37  
38 38  (% style="color:#000000" %)-(%%)Open one image in the beginning of the series and use anatomical landmarks to find the approximate anteroposterior position of the section. Select the atlas modality to be overlayed on the image (MRI, Atlas, etc..)
39 39