Last modified by puchades on 2022/02/18 13:55
From version 23.1
edited by puchades
on 2020/04/07 16:24
Change comment: There is no comment for this version
To version 24.1
edited by evanhancock
on 2020/07/21 09:33
Change comment: There is no comment for this version

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1 -XWiki.puchades
1 +XWiki.evanhancock
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1 1  == [[image:BICCN_QNII_figure.png]] ==
2 2  
3 -== ==
3 +== ==
4 4  
5 5  The QUINT workflow allows you to register series of histological section images from the brain to a 3D reference atlas such as the Allen Mouse Brain Atlas or the Waxholm Space atlas of the rat brain. This is a two-step process:
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21 21  
22 22  (% style="color:#4e5f70" %)Open the //QuickNII// program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file.
23 23  
24 -A detailed //QuickNII// user manual as well as a demo dataset can be found on [[https:~~/~~/www.nitrc.org/projects/quicknii/>>https://www.nitrc.org/projects/quicknii/]]
24 +A detailed //QuickNII// user manual as well as a demo dataset [[can be found here>>https://www.nitrc.org/projects/quicknii/]].
25 25  
26 26  == (% style="color:#c0392b" %)**Anchoring procedure**(%%) ==
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52 52  
53 53  **[[image:VisuAlign_illustration.png]]**
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55 - A detailed //VisuAlign //user manual can be found at [[https:~~/~~/www.nitrc.org/docman/?group_id=1426>>https://www.nitrc.org/docman/?group_id=1426]]
55 + A detailed //VisuAlign //user manual [[can be found here>>https://www.nitrc.org/docman/?group_id=1426]].
56 56  
57 57  **The basic steps are the following:**
58 58