Last modified by puchades on 2022/02/18 13:55
From version 26.1
edited by puchades
on 2020/09/21 16:04
Change comment: There is no comment for this version
To version 27.1
edited by puchades
on 2020/09/21 16:15
Change comment: There is no comment for this version

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1 1  == [[image:BICCN_QNII_figure.png]] ==
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3 -== ==
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5 5  The QUINT workflow allows you to register series of histological section images from the brain to a 3D reference atlas such as the Allen Mouse Brain Atlas or the Waxholm Space atlas of the rat brain. This is a two-step process:
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62 62  1. You can toggle “outline mode” by pulling the opacity slider to the far right. A colour picker on the right side of the slider becomes active for changing the outline colour.
63 63  1. Enabling “Debug mode” from the View menu toggles the display of triangles representing the deformation field, and allows you to change the colour of the triangles.
64 64  1. Finally, use File -> Save As to save your fine-tuned alignment as a new JSON file.
65 +1. There is also an “Export”function for generating .flat files for Nutil.