Last modified by puchades on 2022/02/18 13:55
From version 31.2
edited by puchades
on 2020/11/05 17:32
Change comment: There is no comment for this version
To version 27.1
edited by puchades
on 2020/09/21 16:15
Change comment: There is no comment for this version

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1 1  == [[image:BICCN_QNII_figure.png]] ==
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3 -(% class="wikigeneratedid" id="H-1" %)
4 -(% class="small" %)Section image registration using QuickNII
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8 8  The QUINT workflow allows you to register series of histological section images from the brain to a 3D reference atlas such as the Allen Mouse Brain Atlas or the Waxholm Space atlas of the rat brain. This is a two-step process:
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10 10  1. QuickNII guides you through an interactive affine alignment, including propagation of alignment settings across the section series.
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66 66  1. Enabling “Debug mode” from the View menu toggles the display of triangles representing the deformation field, and allows you to change the colour of the triangles.
67 67  1. Finally, use File -> Save As to save your fine-tuned alignment as a new JSON file.
68 68  1. There is also an “Export”function for generating .flat files for Nutil.
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70 -== (% style="color:#c0392b" %)**Examples of use**(%%) ==
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72 -(% style="color:#c0392b" %)**Visit the QuickNII and VisuAlign collab**
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