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13	13	=== Open QuickNII and load your images ===
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15		-==== You can also add images ====
	15	+Open the QuickNII program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file.
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17		-[[image:Collaboratory.Apps.Article.Code.ArticleSheet@placeholder.jpg]]
	17	+The QuickNII user manual is found on [[https:~~/~~/www.nitrc.org/docman/?group_id=1341.>>https://www.nitrc.org/docman/?group_id=1341]]
18	18
19		-Photo by David Clode
	19	+The basic steps are:
20	20
21		-==== Or code ====
	21	+- (% style="color:#000000" %)Open one image in the beginning of the series and use anatomical landmarks to find the approximate anteroposterior position of the section.     Select the atlas modality to be overlayed to the image (MRI, Atlas, etc..)
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23		-Code blocks can be added by using the code macro:
	23	+- **The transparency slider** can be used continuously to determine how well the atlas fits the sectionDetermine the sectioning angles (dorso-ventral and medio-lateral)
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25		-{{code language="python"}}
26		-x = 1
27		-if x == 1:
28		- # indented four spaces
29		- print("x is 1.")
30		-{{/code}}
	25	+- Save the positions
	26	+
	27	+