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13	13	=== Open QuickNII and load your images ===
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15		-Open the QuickNII program from the .exe file. Once the program opens, click the **Manage data button**.
	15	+Open the QuickNII program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file.
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17	17	The QuickNII user manual is found on [[https:~~/~~/www.nitrc.org/docman/?group_id=1341.>>https://www.nitrc.org/docman/?group_id=1341]]
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19		-The basic steps are:
	19	+>The idea is to determine the cutting angles (dorso-ventral and medio-lateral) for the whole serie. Once found, apply the same angles to the whole serie.
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21		-- (% style="color:#000000" %)Open one image and use anatomical landmarks to find the approximate anteroposterior position of the section. Select the atlas modality to be overlayed to the image (MRI, Atlas, etc..)
	21	+**The basic steps are:**
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23		-- **The transparency slider** can be used continuously to determine how well the atlas fits the sectionDetermine the sectioning angles (dorso-ventral and medio-lateral)
	23	+- (% style="color:#000000" %)Open one image in the beginning of the series and use anatomical landmarks to find the approximate anteroposterior position of the section.     Select the atlas modality to be overlayed to the image (MRI, Atlas, etc..)
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25		-- Save the positions
	25	+- **The transparency slider** can be used continuously to determine how well the atlas fits the section. Determine the sectioning angles (dorso-ventral and medio-lateral) by tilting the atlas.
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	27	+- Save the positions for this section. You can adjust these later
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	29	+- Open the next image,
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