Summary

• Page properties (1 modified, 0 added, 0 removed)

Details

Page properties

Content

...	...	@@ -8,20 +8,27 @@
8	8
9	9	=== (% style="color:#000000" %)Generate your images descriptor file with FileBuider(%%) ===
10	10
11		-Use the small program “FileBuilder.bat” provided with QuickNII. A new window will open, and ask for the folder where your images are located. Point to the correct folder, mark all image files, and click ok. An XML file is generated. Always save this file in the same folder as the resized images.
	11	+Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
12	12
13		-=== Open QuickNII and load your images ===
	13	+>This is a quote. You can add a quote by selecting some text and clicking the quote button in the editor.
14	14
15		-Open the QuickNII program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file.
	15	+Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
16	16
17		-The QuickNII user manual is found on [[https:~~/~~/www.nitrc.org/docman/?group_id=1341.>>https://www.nitrc.org/docman/?group_id=1341]]
	17	+=== H3 Headings Will Appear In The Table of Content ===
18	18
19		-The basic steps are:
	19	+==== You can also add images ====
20	20
21		-- (% style="color:#000000" %)Open one image in the beginning of the series and use anatomical landmarks to find the approximate anteroposterior position of the section.     Select the atlas modality to be overlayed to the image (MRI, Atlas, etc..)
	21	+[[image:Collaboratory.Apps.Article.Code.ArticleSheet@placeholder.jpg]]
22	22
23		-- **The transparency slider** can be used continuously to determine how well the atlas fits the sectionDetermine the sectioning angles (dorso-ventral and medio-lateral)
	23	+Photo by David Clode
24	24
25		-- Save the positions
	25	+==== Or code ====
26	26
	27	+Code blocks can be added by using the code macro:
27	27
	29	+{{code language="python"}}
	30	+x = 1
	31	+if x == 1:
	32	+ # indented four spaces
	33	+ print("x is 1.")
	34	+{{/code}}