Last modified by puchades on 2022/02/18 13:55

From version 5.5
edited by puchades
on 2020/03/24 18:46
Change comment: There is no comment for this version
To version 5.2
edited by puchades
on 2020/03/24 18:38
Change comment: There is no comment for this version

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... ... @@ -12,16 +12,19 @@
12 12  
13 13  === Open QuickNII and load your images ===
14 14  
15 -Open the QuickNII program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file.
15 +==== You can also add images ====
16 16  
17 -The QuickNII user manual is found on [[https:~~/~~/www.nitrc.org/docman/?group_id=1341.>>https://www.nitrc.org/docman/?group_id=1341]]
17 +[[image:Collaboratory.Apps.Article.Code.ArticleSheet@placeholder.jpg]]
18 18  
19 -The basic steps are:
19 +Photo by David Clode
20 20  
21 -- (% style="color:#000000" %)Open one image in the beginning of the series and use anatomical landmarks to find the approximate anteroposterior position of the section.     Select the atlas modality to be overlayed to the image (MRI, Atlas, etc..)
21 +==== Or code ====
22 22  
23 -- **The transparency slider** can be used continuously to determine how well the atlas fits the sectionDetermine the sectioning angles (dorso-ventral and medio-lateral)
23 +Code blocks can be added by using the code macro:
24 24  
25 -- Save the positions
26 -
27 -
25 +{{code language="python"}}
26 +x = 1
27 +if x == 1:
28 + # indented four spaces
29 + print("x is 1.")
30 +{{/code}}