Last modified by puchades on 2022/02/18 13:55
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... ... @@ -14,9 +14,9 @@ 14 14 15 15 Open the QuickNII program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file. 16 16 17 - The QuickNII user manualis found on [[https:~~/~~/www.nitrc.org/docman/?group_id=1341.>>https://www.nitrc.org/docman/?group_id=1341]]17 +A detailled QuickNII user manual as well as a demo dataset can be found on [[https:~~/~~/www.nitrc.org/projects/quicknii/>>https://www.nitrc.org/projects/quicknii/]] 18 18 19 ->The idea is to determine the cutting angles (dorso-ventral and medio-lateral) for the whole serie as these should be consist ant. Once found in a few sections, apply the same angles to thewhole serie.19 +>The idea is to determine the cutting angles (dorso-ventral and medio-lateral) for the whole serie as these should be consistent. Once found in a few sections, apply the same angles to the rest of the serie. 20 20 21 21 **The basic steps are:** 22 22 ... ... @@ -30,4 +30,6 @@ 30 30 31 31 (% style="color:#000000" %)- Explore a few sections in order to find the angles fitting most sections in order to achieve a global anchoring. 32 32 33 +(% style="color:#000000" %)- By having the same angles in these two sections (i.e. ML=+1; DV= -4), QuickNII will apply them to all other sections located in between. The antero-posterior positions of all images are also estimated 33 33 35 +