Last modified by puchades on 2022/02/18 13:55

From version 5.7
edited by puchades
on 2020/03/24 18:56
Change comment: There is no comment for this version
To version 5.8
edited by puchades
on 2020/03/24 19:02
Change comment: There is no comment for this version

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14 14  
15 15  Open the QuickNII program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file.
16 16  
17 -The QuickNII user manual is found on [[https:~~/~~/www.nitrc.org/docman/?group_id=1341.>>https://www.nitrc.org/docman/?group_id=1341]]
17 +A detailled QuickNII user manual as well as a demo dataset can be found on [[https:~~/~~/www.nitrc.org/projects/quicknii/>>https://www.nitrc.org/projects/quicknii/]]
18 18  
19 ->The idea is to determine the cutting angles (dorso-ventral and medio-lateral) for the whole serie as these should be consistant. Once found in a few sections, apply the same angles to the whole serie.
19 +>The idea is to determine the cutting angles (dorso-ventral and medio-lateral) for the whole serie as these should be consistent. Once found in a few sections, apply the same angles to the rest of the serie.
20 20  
21 21  **The basic steps are:**
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31 31  (% style="color:#000000" %)- Explore a few sections in order to find the angles fitting most sections in order to achieve a global anchoring.
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33 +(% style="color:#000000" %)- By having the same angles in these two sections (i.e. ML=+1; DV= -4), QuickNII will apply them to all other sections located in between. The antero-posterior positions of all images are also estimated
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