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Last modified by puchades on 2022/02/18 13:55
From version 5.9
edited by puchades
on 2020/03/24 19:02
Change comment: There is no comment for this version
To version 5.7
edited by puchades
on 2020/03/24 18:56
Change comment: There is no comment for this version

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8 8  
9 9  === (% style="color:#000000" %)Generate your images descriptor file with FileBuider(%%) ===
10 10  
11 -Use the small program “FileBuilder.bat” provided with QuickNII. A new window will open, and ask for the folder where your images are located. Point to the correct folder, mark all image files, and click ok. **An XML file is generated**. **Always save this file in the same folder as the resized images.**
11 +Use the small program “FileBuilder.bat” provided with QuickNII. A new window will open, and ask for the folder where your images are located. Point to the correct folder, mark all image files, and click ok. An XML file is generated. Always save this file in the same folder as the resized images.
12 12  
13 13  === Open QuickNII and load your images ===
14 14  
15 15  Open the QuickNII program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file.
16 16  
17 -A detailled QuickNII user manual as well as a demo dataset can be found on [[https:~~/~~/www.nitrc.org/projects/quicknii/>>https://www.nitrc.org/projects/quicknii/]]
17 +The QuickNII user manual is found on [[https:~~/~~/www.nitrc.org/docman/?group_id=1341.>>https://www.nitrc.org/docman/?group_id=1341]]
18 18  
19 ->The idea is to determine the cutting angles (dorso-ventral and medio-lateral) for the whole serie as these should be consistent. Once found in a few sections, apply the same angles to the rest of the serie.
19 +>The idea is to determine the cutting angles (dorso-ventral and medio-lateral) for the whole serie as these should be consistant. Once found in a few sections, apply the same angles to the whole serie.
20 20  
21 21  **The basic steps are:**
22 22  
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31 31  (% style="color:#000000" %)- Explore a few sections in order to find the angles fitting most sections in order to achieve a global anchoring.
32 32  
33 -(% style="color:#000000" %)- By having the same angles in these two sections (i.e. ML=+1; DV= -4), QuickNII will apply them to all other sections located in between. The antero-posterior positions of all images are also estimated
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35 -