Summary

• Page properties (1 modified, 0 added, 0 removed)

Details

Page properties

Content

...	...	@@ -10,7 +10,7 @@
10	10
11	11	Use the small program “FileBuilder.bat” provided with QuickNII. A new window will open, and ask for the folder where your images are located. Point to the correct folder, mark all image files, and click ok. **An XML file is generated**. **Always save this file in the same folder as the resized images.**
12	12
13		-=== Open QuickNII and load your images ===
	13	+== Open QuickNII and load your images ==
14	14
15	15	Open the QuickNII program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file.
16	16
...	...	@@ -18,6 +18,8 @@
18	18
19	19	>The idea is to determine the cutting angles (dorso-ventral and medio-lateral) for the whole serie as these should be consistent. Once found in a few sections, apply the same angles to the rest of the serie.
20	20
	21	+== **Anchoring procedure** ==
	22	+
21	21	**The basic steps are:**
22	22
23	23	- (% style="color:#000000" %)Open one image in the beginning of the series and use anatomical landmarks to find the approximate anteroposterior position of the section.     Select the atlas modality to be overlayed to the image (MRI, Atlas, etc..)
...	...	@@ -33,5 +33,3 @@
33	33	(% style="color:#000000" %)- By having the same angles in these two sections (i.e. ML=+1; DV= -4), QuickNII will apply them to all other sections located in between. The antero-posterior positions of all images are also estimated.
34	34
35	35	(% style="color:#000000" %)- Review all sections, adjust atlas borders and save.
36		-
37		-