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23	23	**The basic steps are:**
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25		-(% style="color:#000000" %)-(%%) Open one image in the beginning of the series and use anatomical landmarks to find the approximate anteroposterior position of the section.     Select the atlas modality to be overlayed to the image (MRI, Atlas, etc..)
	25	+(% style="color:#000000" %)-(%%)Open one image in the beginning of the series and use anatomical landmarks to find the approximate anteroposterior position of the section.     Select the atlas modality to be overlayed to the image (MRI, Atlas, etc..)
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27		-- **The transparency slider** can be used continuously to determine how well the atlas fits the section. Determine the sectioning angles (dorso-ventral and medio-lateral) by tilting the atlas and adjust the atlas borders.
	27	+-**The transparency slider** can be used continuously to determine how well the atlas fits the section. Determine the sectioning angles (dorso-ventral and medio-lateral) by tilting the atlas and adjust the atlas borders.
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29		-- Save the positions for this section for now, you can adjust these later.
	29	+-Save the positions for this section for now, you can adjust these later.
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31		-- Open the next image, located at the other end of the serie and repeat the same procedure as above i.e. find the approximate anteroposterior position of the section and test how well the cutting angles fit this section. Save the positions.
	31	+-Open the next image, located at the other end of the serie and repeat the same procedure as above i.e. find the approximate anteroposterior position of the section and test how well the cutting angles fit this section. Save the positions.
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33		-- Explore a few sections in order to find the angles fitting most sections in order to achieve a global anchoring.
	33	+-Explore a few sections in order to find the angles fitting most sections in order to achieve a global anchoring.
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35		-- By having the same angles in these two sections (i.e. ML=+1; DV= -4), QuickNII will apply them to all other sections located in between. The antero-posterior positions of all images are also estimated.
	35	+-By having the same angles in these two sections (i.e. ML=+1; DV= -4), QuickNII will apply them to all other sections located in between. The antero-posterior positions of all images are also estimated.
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37		-- Review all sections, adjust atlas borders and save.
	37	+-Review all sections, adjust atlas borders and save.
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39		--Export custom atlas slices corresponding to your series by clicking on the **“export Slices”** button..flat files
	39	+-Export custom atlas slices corresponding to your series by clicking on the **“export Slices”** button. The exported .flat files are used for the quantification by Nutil Quantifier.
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41	41	== **Nonlinear adjustment with VisuAlign** ==
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