Wiki source code of 3. Image registration to reference atlas using QuickNII
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4.2 | 1 | == [[image:BICCN_QNII_figure.png]] == |
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1.1 | 2 | |
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3.1 | 3 | == Preparation of the image serie == |
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4.4 | 5 | Resize your raw 2D images to 24-bit PNG and JPEG. Images can be loaded up to the resolution of 16 megapixels (e.g.4000x4000 or 5000x3000 pixels), however QuickNII does not benefit from image resolutions exceeding the resolution of the monitor in use. |
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3.1 | 6 | |
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4.6 | 7 | The resized files must follow the naming convention having an unique ID in the format: sXXX.., with XXX.. reflecting the serial order and spacing of the sections (e.g. s002, s006, s010 for every 4^^th^^ section starting with section 2). |
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4.4 | 8 | |
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4.3 | 9 | === (% style="color:#000000" %)Generate your images descriptor file with FileBuider(%%) === |
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3.1 | 10 | |
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1.1 | 11 | Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum. |
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| 13 | >This is a quote. You can add a quote by selecting some text and clicking the quote button in the editor. | ||
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| 15 | Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum. | ||
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| 17 | === H3 Headings Will Appear In The Table of Content === | ||
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| 19 | ==== You can also add images ==== | ||
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| 21 | [[image:Collaboratory.Apps.Article.Code.ArticleSheet@placeholder.jpg]] | ||
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| 23 | Photo by David Clode | ||
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| 25 | ==== Or code ==== | ||
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| 27 | Code blocks can be added by using the code macro: | ||
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| 29 | {{code language="python"}} | ||
| 30 | x = 1 | ||
| 31 | if x == 1: | ||
| 32 | # indented four spaces | ||
| 33 | print("x is 1.") | ||
| 34 | {{/code}} |