Changes for page SC3 Visualization Framework Use Case
Last modified by jensb on 2023/04/27 14:17
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... ... @@ -19,14 +19,62 @@ 19 19 * The setup guides can be found in the user guides of NEST Desktop and ViSimpl: 20 20 ** ViSimpl [[https:~~/~~/visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html>>url:https://visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html]] 21 21 ** NEST Desktop [[https:~~/~~/nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html>>https://nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html]] 22 -* *Insite [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]]22 +* More documentation regarding the used in-situ recording backend Insite can be found in the Insite user docs: [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]] 23 23 24 + 25 +(% style="text-align:center" %) 26 +[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results"]] 27 + 28 += = 29 + 30 +(% style="text-align:center" %) 31 +[[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits"]] 32 + 33 +(% style="text-align:center" %) 34 +[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop"]] 35 + 36 +(% class="wikigeneratedid" %) 37 += Preparation = 38 + 39 +First, download the Docker Compose configuration file for NEST Desktop and Insite. 40 + 41 +{{{wget https://raw.githubusercontent.com/nest-desktop/nest-desktop-docker/main/examples/insite/docker-compose.yml 42 +}}} 43 + 44 +Then, pull the docker images using Docker Compose. 45 + 46 +{{{docker-compose pull 47 +}}} 48 + 49 +Afterwards, you can start NEST Desktop (with Insite). 50 + 51 +{{{docker-compose up}}} 52 + 53 +---- 54 + 55 +For ViSimpl, download the (binary) AppImage from the [[page>>url:https://vg-lab.es/visimpl/#downloads]], make it executable and then open it. 56 + 57 +{{{VERSION=1.8.3 58 +wget https://vg-lab.es/apps/visimpl/latest-release/visimpl-$VERSION-x86_64.AppImage 59 +chmod +x visimpl-$VERSION-x86_64.AppImage 60 +./visimpl-$VERSION-x86_64.AppImage 61 +}}} 62 + 63 +(% class="wikigeneratedid" %) 64 += How to use NEST Desktop with ViSimpl (Overview) = 65 + 66 +1. In NEST Desktop, make sure that both backends (NEST Simulator and Insite) are running. 67 +1. Run the simulation of the network with Insite as recording backend. 68 +1. In ViSimpl, click on the REST button to get data from Insite (check that you use the correct URL). 69 +1. Now, ViSimpl shows spatial dots representing neurons and spikes are displayed in glowing mode. 70 + 24 24 = Usage Video = 25 25 26 -* A video showing the usage can be found here[TBA][[https:~~/~~/drive.ebrains.eu/smart-link/ebba665f-ff7a-4956-8b28-663b13303a55/>>https://drive.ebrains.eu/smart-link/ebba665f-ff7a-4956-8b28-663b13303a55/]]73 +* A video showing the usage can be found [[here>>doc:Video]]. 27 27 ))) 28 28 29 29 77 + 30 30 (% class="col-xs-12 col-sm-4" %) 31 31 ((( 32 32 {{box title="**Contents**"}}
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