Changes for page SC3 Visualization Framework Use Case
Last modified by jensb on 2023/04/27 14:17
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... ... @@ -14,13 +14,73 @@ 14 14 ((( 15 15 = Overview = 16 16 17 -* This page serves as a central information hub presenting the work done in the SC3 Visualization Framework Use Case. 17 +* This page serves as a central information hub presenting an overview of the work done in the SC3 Visualization Framework Use Case. 18 18 * In this use case, a connection between NEST Desktop, ViSimpl and Insite was realized. 19 -* The setup guides can be found in the user guides of NEST Desktop and ViSimpl: 19 +* The detailed setup guides can be found in the official user guides of NEST Desktop and ViSimpl on ReadTheDocs: 20 20 ** ViSimpl [[https:~~/~~/visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html>>url:https://visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html]] 21 21 ** NEST Desktop [[https:~~/~~/nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html>>https://nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html]] 22 22 * More documentation regarding the used in-situ recording backend Insite can be found in the Insite user docs: [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]] 23 23 24 +(% style="text-align:center" %) 25 +[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results"]] 26 + 27 +(% style="text-align:center" %) 28 +[[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits"]] 29 + 30 +(% style="text-align:center" %) 31 +[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop"]] 32 + 33 += = 34 + 35 + 36 += Preparation (Quickstart Guide) = 37 + 38 +First, download the Docker Compose configuration file for NEST Desktop and Insite. 39 + 40 +(% class="box" %) 41 +((( 42 +##wget https:~/~/raw.githubusercontent.com/nest-desktop/nest-desktop-docker/main/examples/insite/docker-compose.yml## 43 +))) 44 + 45 +Then, pull the docker images using Docker Compose. 46 + 47 +(% class="box" %) 48 +((( 49 +##docker-compose pull## 50 +))) 51 + 52 +Afterwards, you can start NEST Desktop (with Insite). 53 + 54 +(% class="box" %) 55 +((( 56 +##docker-compose up## 57 +))) 58 + 59 +---- 60 + 61 +For ViSimpl, download the (binary) AppImage from the [[page>>url:https://vg-lab.es/visimpl/#downloads]], make it executable and then open it. 62 + 63 +(% class="box" %) 64 +((( 65 +##VERSION=1.8.3 66 +wget https:~/~/vg-lab.es/apps/visimpl/latest-release/visimpl-$VERSION-x86_64.AppImage 67 +chmod +x visimpl-$VERSION-x86_64.AppImage 68 +./visimpl-$VERSION-x86_64.AppImage## 69 +))) 70 + 71 += = 72 + 73 + 74 += How to use NEST Desktop with ViSimpl (Quickstart Guide) = 75 + 76 +1. In NEST Desktop, make sure that both backends (NEST Simulator and Insite) are running. 77 +1. Run the simulation of the network with Insite as recording backend. 78 +1. In ViSimpl, click on the REST button to get data from Insite (check that you use the correct URL). 79 +1. Now, ViSimpl shows spatial dots representing neurons and spikes are displayed in glowing mode. 80 + 81 += = 82 + 83 + 24 24 = Usage Video = 25 25 26 26 * A video showing the usage can be found [[here>>doc:Video]]. ... ... @@ -27,6 +27,7 @@ 27 27 ))) 28 28 29 29 90 + 30 30 (% class="col-xs-12 col-sm-4" %) 31 31 ((( 32 32 {{box title="**Contents**"}}
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