Changes for page SC3 Visualization Framework Use Case
Last modified by jensb on 2023/04/27 14:17
Summary
-
Page properties (1 modified, 0 added, 0 removed)
Details
- Page properties
-
- Content
-
... ... @@ -21,8 +21,9 @@ 21 21 ** NEST Desktop [[https:~~/~~/nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html>>https://nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html]] 22 22 * More documentation regarding the used in-situ recording backend Insite can be found in the Insite user docs: [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]] 23 23 24 + 24 24 (% style="text-align:center" %) 25 -[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results" height="720" width="1307"]]26 +[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results"]] 26 26 27 27 = = 28 28 ... ... @@ -30,8 +30,43 @@ 30 30 [[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits"]] 31 31 32 32 (% style="text-align:center" %) 33 -[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop" height="720" width="1306"]]34 +[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop"]] 34 34 36 +(% class="wikigeneratedid" %) 37 += Preparation = 38 + 39 +First, download the Docker Compose configuration file for NEST Desktop and Insite. 40 + 41 +{{{wget https://raw.githubusercontent.com/nest-desktop/nest-desktop-docker/main/examples/insite/docker-compose.yml 42 +}}} 43 + 44 +Then, pull the docker images using Docker Compose. 45 + 46 +{{{docker-compose pull 47 +}}} 48 + 49 +Afterwards, you can start NEST Desktop (with Insite). 50 + 51 +{{{docker-compose up}}} 52 + 53 +---- 54 + 55 +For ViSimpl, download the (binary) AppImage from the [[page>>url:https://vg-lab.es/visimpl/#downloads]], make it executable and then open it. 56 + 57 +{{{VERSION=1.8.3 58 +wget https://vg-lab.es/apps/visimpl/latest-release/visimpl-$VERSION-x86_64.AppImage 59 +chmod +x visimpl-$VERSION-x86_64.AppImage 60 +./visimpl-$VERSION-x86_64.AppImage 61 +}}} 62 + 63 +(% class="wikigeneratedid" %) 64 += How to use NEST Desktop with ViSimpl (Overview) = 65 + 66 +1. In NEST Desktop, make sure that both backends (NEST Simulator and Insite) are running. 67 +1. Run the simulation of the network with Insite as recording backend. 68 +1. In ViSimpl, click on the REST button to get data from Insite (check that you use the correct URL). 69 +1. Now, ViSimpl shows spatial dots representing neurons and spikes are displayed in glowing mode. 70 + 35 35 = Usage Video = 36 36 37 37 * A video showing the usage can be found [[here>>doc:Video]].