Changes for page SC3 Visualization Framework Use Case
Last modified by jensb on 2023/04/27 14:17
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... ... @@ -21,53 +21,19 @@ 21 21 ** NEST Desktop [[https:~~/~~/nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html>>https://nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html]] 22 22 * More documentation regarding the used in-situ recording backend Insite can be found in the Insite user docs: [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]] 23 23 24 - 25 25 (% style="text-align:center" %) 26 -[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results"]] 25 +[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results" height="720" width="1307"]] 27 27 27 +(% class="wikigeneratedid" %) 28 28 = = 29 29 30 30 (% style="text-align:center" %) 31 -[[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits"]] 31 +[[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits" height="720" width="1307"]] 32 32 33 33 (% style="text-align:center" %) 34 -[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop"]] 34 +[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop" height="720" width="1306"]] 35 35 36 36 (% class="wikigeneratedid" %) 37 -= Preparation = 38 - 39 -First, download the Docker Compose configuration file for NEST Desktop and Insite. 40 - 41 -{{{wget https://raw.githubusercontent.com/nest-desktop/nest-desktop-docker/main/examples/insite/docker-compose.yml 42 -}}} 43 - 44 -Then, pull the docker images using Docker Compose. 45 - 46 -{{{docker-compose pull 47 -}}} 48 - 49 -Afterwards, you can start NEST Desktop (with Insite). 50 - 51 -{{{docker-compose up}}} 52 - 53 ----- 54 - 55 -For ViSimpl, download the (binary) AppImage from the [[page>>url:https://vg-lab.es/visimpl/#downloads]], make it executable and then open it. 56 - 57 -{{{VERSION=1.8.3 58 -wget https://vg-lab.es/apps/visimpl/latest-release/visimpl-$VERSION-x86_64.AppImage 59 -chmod +x visimpl-$VERSION-x86_64.AppImage 60 -./visimpl-$VERSION-x86_64.AppImage 61 -}}} 62 - 63 -(% class="wikigeneratedid" %) 64 -= How to use NEST Desktop with ViSimpl (Overview) = 65 - 66 -1. In NEST Desktop, make sure that both backends (NEST Simulator and Insite) are running. 67 -1. Run the simulation of the network with Insite as recording backend. 68 -1. In ViSimpl, click on the REST button to get data from Insite (check that you use the correct URL). 69 -1. Now, ViSimpl shows spatial dots representing neurons and spikes are displayed in glowing mode. 70 - 71 71 = Usage Video = 72 72 73 73 * A video showing the usage can be found [[here>>doc:Video]].