Last modified by jensb on 2023/04/27 14:17
From version 22.1
edited by jensb
on 2023/04/14 18:06
Change comment: There is no comment for this version
To version 6.1
edited by jensb
on 2023/03/10 14:18
Change comment: There is no comment for this version

Summary

Details

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= SC3 Visualization Framework Use Case =
5 += My Collab's Extended Title =
6 6  
7 -Use ViSimpl together with NEST Desktop and Insite
7 +My collab's subtitle
8 8  )))
9 9  )))
10 10  
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12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -= Overview =
15 += What can I find here? =
16 16  
17 -* This page serves as a central information hub presenting the work done in the SC3 Visualization Framework Use Case.
18 -* In this use case, a connection between NEST Desktop, ViSimpl and Insite was realized.
19 -* The setup guides can be found in the user guides of NEST Desktop and ViSimpl:
20 -** ViSimpl [[https:~~/~~/visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html>>url:https://visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html]]
21 -** NEST Desktop [[https:~~/~~/nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html>>https://nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html]]
22 -* More documentation regarding the used in-situ recording backend Insite can be found in the Insite user docs: [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]]
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
23 23  
21 += Who has access? =
24 24  
25 -(% style="text-align:center" %)
26 -[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results"]]
27 -
28 -= =
29 -
30 -(% style="text-align:center" %)
31 -[[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits"]]
32 -
33 -(% style="text-align:center" %)
34 -[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop"]]
35 -
36 -(% class="wikigeneratedid" %)
37 -= Preparation =
38 -
39 -First, download the Docker Compose configuration file for NEST Desktop and Insite.
40 -
41 -{{{wget https://raw.githubusercontent.com/nest-desktop/nest-desktop-docker/main/examples/insite/docker-compose.yml
42 -}}}
43 -
44 -Then, pull the docker images using Docker Compose.
45 -
46 -{{{docker-compose pull
47 -}}}
48 -
49 -Afterwards, you can start NEST Desktop (with Insite).
50 -
51 -{{{docker-compose up}}}
52 -
53 -----
54 -
55 -For ViSimpl, download the (binary) AppImage from the [[page>>url:https://vg-lab.es/visimpl/#downloads]], make it executable and then open it.
56 -
57 -{{{VERSION=1.8.3
58 -wget https://vg-lab.es/apps/visimpl/latest-release/visimpl-$VERSION-x86_64.AppImage
59 -chmod +x visimpl-$VERSION-x86_64.AppImage
60 -./visimpl-$VERSION-x86_64.AppImage
61 -}}}
62 -
63 -(% class="wikigeneratedid" %)
64 -= How to use NEST Desktop with ViSimpl (Overview) =
65 -
66 -1. In NEST Desktop, make sure that both backends (NEST Simulator and Insite) are running.
67 -1. Run the simulation of the network with Insite as recording backend.
68 -1. In ViSimpl, click on the REST button to get data from Insite (check that you use the correct URL).
69 -1. Now, ViSimpl shows spatial dots representing neurons and spikes are displayed in glowing mode.
70 -
71 -= Usage Video =
72 -
73 -* A video showing the usage can be found [[here>>doc:Video]].
23 +Describe the audience of this collab.
74 74  )))
75 75  
76 76  
77 -
78 78  (% class="col-xs-12 col-sm-4" %)
79 79  (((
80 80  {{box title="**Contents**"}}
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Collaboratory.Apps.Collab.Code.CollabClass[0]
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1 -Yes
1 +No