Changes for page SC3 Visualization Framework Use Case
Last modified by jensb on 2023/04/27 14:17
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... ... @@ -14,9 +14,9 @@ 14 14 ((( 15 15 = Overview = 16 16 17 -* This page serves as a central information hub presenting an overview ofthe work done in the SC3 Visualization Framework Use Case.17 +* This page serves as a central information hub presenting the work done in the SC3 Visualization Framework Use Case. 18 18 * In this use case, a connection between NEST Desktop, ViSimpl and Insite was realized. 19 -* The detailedsetup guides can be found in theofficialuser guides of NEST Desktop and ViSimplon ReadTheDocs:19 +* The setup guides can be found in the user guides of NEST Desktop and ViSimpl: 20 20 ** ViSimpl [[https:~~/~~/visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html>>url:https://visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html]] 21 21 ** NEST Desktop [[https:~~/~~/nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html>>https://nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html]] 22 22 * More documentation regarding the used in-situ recording backend Insite can be found in the Insite user docs: [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]] ... ... @@ -24,6 +24,8 @@ 24 24 (% style="text-align:center" %) 25 25 [[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results"]] 26 26 27 += = 28 + 27 27 (% style="text-align:center" %) 28 28 [[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits"]] 29 29 ... ... @@ -30,67 +30,19 @@ 30 30 (% style="text-align:center" %) 31 31 [[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop"]] 32 32 35 += Usage Video = 33 33 34 - 35 -= Preparation (Quickstart Guide) = 36 - 37 -First, download the Docker Compose configuration file for NEST Desktop and Insite. 38 - 39 -(% class="box" %) 40 -((( 41 -##wget https:~/~/raw.githubusercontent.com/nest-desktop/nest-desktop-docker/main/examples/insite/docker-compose.yml## 37 +* A video showing the usage can be found [[here>>doc:Video]]. 42 42 ))) 43 43 44 -Then, pull the docker images using Docker Compose. 45 45 46 -(% class="box" %) 47 -((( 48 -##docker-compose pull## 49 -))) 50 50 51 -Afterwards, you can start NEST Desktop (with Insite). 52 - 53 -(% class="box" %) 42 +(% class="col-xs-12 col-sm-4" %) 54 54 ((( 55 -##docker-compose up## 56 -))) 44 +{{box title="**Contents**"}} 45 +{{toc/}} 46 +{{/box}} 57 57 58 ----- 59 - 60 -For ViSimpl, download the (binary) AppImage from the [[page>>url:https://vg-lab.es/visimpl/#downloads]], make it executable and then open it. 61 - 62 -(% class="box" %) 63 -((( 64 -##VERSION=1.8.3 65 -wget https:~/~/vg-lab.es/apps/visimpl/latest-release/visimpl-$VERSION-x86_64.AppImage 66 -chmod +x visimpl-$VERSION-x86_64.AppImage 67 -./visimpl-$VERSION-x86_64.AppImage## 48 + 68 68 ))) 69 - 70 - 71 - 72 -= How to use NEST Desktop with ViSimpl (Quickstart Guide) = 73 - 74 -1. In NEST Desktop, make sure that both backends (NEST Simulator and Insite) are running. 75 -1. Run the simulation of the network with Insite as recording backend. 76 -1. In ViSimpl, click on the REST button to get data from Insite (check that you use the correct URL). 77 -1. Now, ViSimpl shows spatial dots representing neurons and spikes are displayed in glowing mode. 78 - 79 -= Usage Video = 80 - 81 -A video showing the usage can be found [[here>>doc:Video]]. 82 - 83 -{{html}} 84 -<iframe height="386" src="https://drive.ebrains.eu/seafhttp/files/9d70e2c9-1280-4512-a18b-206f48505eff/2023-03-27_NEST_Desktop_ViSimpl_v0.6.mp4" width="685" /> 85 - 86 -<style> 87 - iframe { 88 - height: 100vh; 89 - width: 100%; 90 - object-fit: fill; // use "cover" to avoid distortion 91 - position: absolute; 92 - } 93 -</style> 94 -{{/html}} 95 95 ))) 96 -)))