Last modified by jensb on 2023/04/27 14:17
From version 31.2
edited by spreizer
on 2023/04/18 10:23
Change comment: There is no comment for this version
To version 7.1
edited by jensb
on 2023/03/10 14:18
Change comment: There is no comment for this version

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1 -XWiki.spreizer
1 +XWiki.jensb
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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= SC3 Visualization Framework Use Case =
5 += My Collab's Extended Title =
6 6  
7 -Use ViSimpl together with NEST Desktop and Insite
7 +My collab's subtitle
8 8  )))
9 9  )))
10 10  
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12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -= Overview =
15 += What can I find here? =
16 16  
17 -* This page serves as a central information hub presenting an overview of the work done in the SC3 Visualization Framework Use Case.
18 -* In this use case, a connection between NEST Desktop, ViSimpl and Insite was realized.
19 -* The detailed setup guides can be found in the official user guides of NEST Desktop and ViSimpl on ReadTheDocs:
20 -** ViSimpl [[https:~~/~~/visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html>>url:https://visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html]]
21 -** NEST Desktop [[https:~~/~~/nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html>>https://nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html]]
22 -* More documentation regarding the used in-situ recording backend Insite can be found in the Insite user docs: [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]]
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
23 23  
24 -(% style="text-align:center" %)
25 -[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results"]]
21 += Who has access? =
26 26  
27 -(% style="text-align:center" %)
28 -[[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits"]]
29 -
30 -(% style="text-align:center" %)
31 -[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop"]]
32 -
33 -
34 -
35 -= Preparation (Quickstart Guide) =
36 -
37 -First, download the Docker Compose configuration file for NEST Desktop and Insite.
38 -
39 -(% class="box" %)
40 -(((
41 -##wget https:~/~/raw.githubusercontent.com/nest-desktop/nest-desktop-docker/main/examples/insite/docker-compose.yml##
23 +Describe the audience of this collab.
42 42  )))
43 43  
44 -Then, pull the docker images using Docker Compose.
45 45  
46 -(% class="box" %)
27 +(% class="col-xs-12 col-sm-4" %)
47 47  (((
48 -##docker-compose pull##
49 -)))
29 +{{box title="**Contents**"}}
30 +{{toc/}}
31 +{{/box}}
50 50  
51 -Afterwards, you can start NEST Desktop (with Insite).
52 -
53 -(% class="box" %)
54 -(((
55 -##docker-compose up##
33 +
56 56  )))
57 -
58 -----
59 -
60 -For ViSimpl, download the (binary) AppImage from the [[page>>url:https://vg-lab.es/visimpl/#downloads]], make it executable and then open it.
61 -
62 -(% class="box" %)
63 -(((
64 -##VERSION=1.8.3
65 -wget https:~/~/vg-lab.es/apps/visimpl/latest-release/visimpl-$VERSION-x86_64.AppImage
66 -chmod +x visimpl-$VERSION-x86_64.AppImage
67 -./visimpl-$VERSION-x86_64.AppImage##
68 68  )))
69 -
70 -
71 -
72 -= How to use NEST Desktop with ViSimpl (Quickstart Guide) =
73 -
74 -1. In NEST Desktop, make sure that both backends (NEST Simulator and Insite) are running.
75 -1. Run the simulation of the network with Insite as recording backend.
76 -1. In ViSimpl, click on the REST button to get data from Insite (check that you use the correct URL).
77 -1. Now, ViSimpl shows spatial dots representing neurons and spikes are displayed in glowing mode.
78 -
79 -= Usage Video =
80 -
81 -A video showing the usage can be found [[here>>doc:Video]].
82 -
83 -{{html}}
84 -<iframe height="386" src="https://drive.ebrains.eu/seafhttp/files/9d70e2c9-1280-4512-a18b-206f48505eff/2023-03-27_NEST_Desktop_ViSimpl_v0.6.mp4" width="685" />
85 -
86 -<style>
87 - iframe {
88 - height: 100vh;
89 - width: 100%;
90 - object-fit: fill; // use "cover" to avoid distortion
91 - position: absolute;
92 - }
93 -</style>
94 -{{/html}}
95 -)))
96 -)))
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