Last modified by jensb on 2023/04/27 14:17
From version 6.1
edited by jensb
on 2023/03/10 14:18
Change comment: There is no comment for this version
To version 25.1
edited by jensb
on 2023/04/14 18:13
Change comment: There is no comment for this version

Summary

Details

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= My Collab's Extended Title =
5 += SC3 Visualization Framework Use Case =
6 6  
7 -My collab's subtitle
7 +Use ViSimpl together with NEST Desktop and Insite
8 8  )))
9 9  )))
10 10  
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12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -= What can I find here? =
15 += Overview =
16 16  
17 -* Notice how the table of contents on the right
18 -* is automatically updated
19 -* to hold this page's headers
17 +* This page serves as a central information hub presenting an overview of the work done in the SC3 Visualization Framework Use Case.
18 +* In this use case, a connection between NEST Desktop, ViSimpl and Insite was realized.
19 +* The detailed setup guides can be found in the official user guides of NEST Desktop and ViSimpl on ReadTheDocs:
20 +** ViSimpl [[https:~~/~~/visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html>>url:https://visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html]]
21 +** NEST Desktop [[https:~~/~~/nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html>>https://nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html]]
22 +* More documentation regarding the used in-situ recording backend Insite can be found in the Insite user docs: [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]]
20 20  
21 -= Who has access? =
24 +(% style="text-align:center" %)
25 +[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results"]]
22 22  
23 -Describe the audience of this collab.
27 +(% style="text-align:center" %)
28 +[[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits"]]
29 +
30 +(% style="text-align:center" %)
31 +[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop"]]
32 +
33 += Preparation (Quickstart Guide) =
34 +
35 +First, download the Docker Compose configuration file for NEST Desktop and Insite.
36 +
37 +(% class="box" %)
38 +(((
39 +##wget https:~/~/raw.githubusercontent.com/nest-desktop/nest-desktop-docker/main/examples/insite/docker-compose.yml##
24 24  )))
25 25  
42 +Then, pull the docker images using Docker Compose.
26 26  
44 +(% class="box" %)
45 +(((
46 +##docker-compose pull##
47 +)))
48 +
49 +Afterwards, you can start NEST Desktop (with Insite).
50 +
51 +(% class="box" %)
52 +(((
53 +##docker-compose up##
54 +)))
55 +
56 +----
57 +
58 +For ViSimpl, download the (binary) AppImage from the [[page>>url:https://vg-lab.es/visimpl/#downloads]], make it executable and then open it.
59 +
60 +(% class="box" %)
61 +(((
62 +##VERSION=1.8.3
63 +wget https:~/~/vg-lab.es/apps/visimpl/latest-release/visimpl-$VERSION-x86_64.AppImage
64 +chmod +x visimpl-$VERSION-x86_64.AppImage
65 +./visimpl-$VERSION-x86_64.AppImage##
66 +)))
67 +
68 += How to use NEST Desktop with ViSimpl (Quickstart Guide) =
69 +
70 +1. In NEST Desktop, make sure that both backends (NEST Simulator and Insite) are running.
71 +1. Run the simulation of the network with Insite as recording backend.
72 +1. In ViSimpl, click on the REST button to get data from Insite (check that you use the correct URL).
73 +1. Now, ViSimpl shows spatial dots representing neurons and spikes are displayed in glowing mode.
74 +
75 += Usage Video =
76 +
77 +* A video showing the usage can be found [[here>>doc:Video]].
78 +)))
79 +
80 +
81 +
27 27  (% class="col-xs-12 col-sm-4" %)
28 28  (((
29 29  {{box title="**Contents**"}}
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Collaboratory.Apps.Collab.Code.CollabClass[0]
Public
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1 -No
1 +Yes